Sample	Total read pairs processed	Read 1 with adapter	Read 2 with adapter	Pairs that were too short	Pairs with too many N	Pairs written (passing filters)
Control.2waf.1	24,181,766	771,136 (3.2%)	840,662 (3.5%)	0 (0.0%)	0 (0.0%)	24,181,766 (100.0%)
Control.2waf.2	24,074,806	761,638 (3.2%)	847,837 (3.5%)	0 (0.0%)	0 (0.0%)	24,074,806 (100.0%)
Control.2waf.3	24,136,475	767,565 (3.2%)	838,048 (3.5%)	0 (0.0%)	0 (0.0%)	24,136,475 (100.0%)
Control.3waf.1	24,110,784	768,458 (3.2%)	829,633 (3.4%)	0 (0.0%)	0 (0.0%)	24,110,784 (100.0%)
Control.3waf.2	24,269,419	785,149 (3.2%)	835,225 (3.4%)	0 (0.0%)	0 (0.0%)	24,269,419 (100.0%)
Control.3waf.3	24,211,154	774,407 (3.2%)	834,681 (3.4%)	0 (0.0%)	0 (0.0%)	24,211,154 (100.0%)
Control.4waf.1	24,074,767	764,271 (3.2%)	813,306 (3.4%)	0 (0.0%)	0 (0.0%)	24,074,767 (100.0%)
Control.4waf.2	24,125,232	771,333 (3.2%)	818,841 (3.4%)	0 (0.0%)	0 (0.0%)	24,125,232 (100.0%)
Control.4waf.3	24,086,567	752,758 (3.1%)	830,577 (3.4%)	0 (0.0%)	0 (0.0%)	24,086,567 (100.0%)
Drought.2waf.1	24,169,294	766,713 (3.2%)	822,286 (3.4%)	0 (0.0%)	0 (0.0%)	24,169,294 (100.0%)
Drought.2waf.2	24,059,909	755,070 (3.1%)	827,937 (3.4%)	0 (0.0%)	0 (0.0%)	24,059,909 (100.0%)
Drought.2waf.3	24,115,152	756,748 (3.1%)	833,170 (3.5%)	0 (0.0%)	0 (0.0%)	24,115,152 (100.0%)
Drought.3waf.1	24,164,404	752,184 (3.1%)	834,413 (3.5%)	0 (0.0%)	0 (0.0%)	24,164,404 (100.0%)
Drought.3waf.2	24,174,592	755,063 (3.1%)	833,689 (3.4%)	0 (0.0%)	0 (0.0%)	24,174,592 (100.0%)
Drought.3waf.3	24,252,442	760,291 (3.1%)	834,959 (3.4%)	0 (0.0%)	0 (0.0%)	24,252,442 (100.0%)
Drought.4waf.1	24,159,999	774,862 (3.2%)	819,006 (3.4%)	0 (0.0%)	0 (0.0%)	24,159,999 (100.0%)
Drought.4waf.2	24,189,334	767,076 (3.2%)	824,544 (3.4%)	0 (0.0%)	0 (0.0%)	24,189,334 (100.0%)
Drought.4waf.3	24,200,426	778,708 (3.2%)	816,475 (3.4%)	0 (0.0%)	0 (0.0%)	24,200,426 (100.0%)