Sample	Total read pairs processed	Read 1 with adapter	Read 2 with adapter	Pairs that were too short	Pairs with too many N	Pairs written (passing filters)
KO.33C.1	24,208,431	587,289 (2.4%)	688,825 (2.8%)	1 (0.0%)	0 (0.0%)	24,208,430 (100.0%)
KO.33C.2	24,220,085	580,943 (2.4%)	692,590 (2.9%)	1 (0.0%)	0 (0.0%)	24,220,084 (100.0%)
KO.33C.3	24,223,465	583,272 (2.4%)	685,364 (2.8%)	0 (0.0%)	0 (0.0%)	24,223,465 (100.0%)
KO.NaCl.1	24,096,176	588,231 (2.4%)	677,371 (2.8%)	1 (0.0%)	0 (0.0%)	24,096,175 (100.0%)
KO.NaCl.2	24,160,938	583,788 (2.4%)	682,957 (2.8%)	0 (0.0%)	0 (0.0%)	24,160,938 (100.0%)
KO.NaCl.3	24,164,992	585,505 (2.4%)	682,068 (2.8%)	0 (0.0%)	0 (0.0%)	24,164,992 (100.0%)
KO.control_T.1	24,106,007	581,520 (2.4%)	672,930 (2.8%)	0 (0.0%)	0 (0.0%)	24,106,007 (100.0%)
KO.control_T.2	24,235,672	585,326 (2.4%)	678,260 (2.8%)	1 (0.0%)	0 (0.0%)	24,235,671 (100.0%)
KO.control_T.3	24,118,616	586,113 (2.4%)	674,193 (2.8%)	1 (0.0%)	0 (0.0%)	24,118,615 (100.0%)
KO.manitol.1	24,233,049	583,760 (2.4%)	683,103 (2.8%)	0 (0.0%)	0 (0.0%)	24,233,049 (100.0%)
KO.manitol.2	24,104,735	587,340 (2.4%)	676,244 (2.8%)	0 (0.0%)	0 (0.0%)	24,104,735 (100.0%)
KO.manitol.3	24,089,531	584,398 (2.4%)	684,043 (2.8%)	0 (0.0%)	0 (0.0%)	24,089,531 (100.0%)
KO.mock.1	24,164,415	584,698 (2.4%)	677,815 (2.8%)	0 (0.0%)	0 (0.0%)	24,164,415 (100.0%)
KO.mock.2	24,227,657	580,636 (2.4%)	681,722 (2.8%)	0 (0.0%)	0 (0.0%)	24,227,657 (100.0%)
KO.mock.3	24,091,131	578,951 (2.4%)	674,557 (2.8%)	0 (0.0%)	0 (0.0%)	24,091,131 (100.0%)
td.33C.1	24,189,743	632,739 (2.6%)	637,054 (2.6%)	0 (0.0%)	0 (0.0%)	24,189,743 (100.0%)
td.33C.2	24,166,114	608,240 (2.5%)	645,642 (2.7%)	0 (0.0%)	0 (0.0%)	24,166,114 (100.0%)
td.33C.3	24,081,946	612,247 (2.5%)	644,478 (2.7%)	0 (0.0%)	0 (0.0%)	24,081,946 (100.0%)
td.NaCl.1	24,046,929	583,870 (2.4%)	678,366 (2.8%)	0 (0.0%)	0 (0.0%)	24,046,929 (100.0%)
td.NaCl.2	24,233,510	589,109 (2.4%)	681,989 (2.8%)	0 (0.0%)	0 (0.0%)	24,233,510 (100.0%)
td.NaCl.3	24,108,342	586,747 (2.4%)	677,275 (2.8%)	1 (0.0%)	0 (0.0%)	24,108,341 (100.0%)
td.control_T.1	24,188,211	608,451 (2.5%)	632,065 (2.6%)	2 (0.0%)	0 (0.0%)	24,188,209 (100.0%)
td.control_T.2	24,071,551	601,532 (2.5%)	640,974 (2.7%)	0 (0.0%)	0 (0.0%)	24,071,551 (100.0%)
td.control_T.3	24,102,755	599,338 (2.5%)	633,081 (2.6%)	0 (0.0%)	0 (0.0%)	24,102,755 (100.0%)
td.manitol.1	24,221,230	591,606 (2.4%)	688,586 (2.8%)	0 (0.0%)	0 (0.0%)	24,221,230 (100.0%)
td.manitol.2	24,247,179	582,280 (2.4%)	687,493 (2.8%)	0 (0.0%)	0 (0.0%)	24,247,179 (100.0%)
td.manitol.3	22,940,652	574,974 (2.5%)	611,625 (2.7%)	0 (0.0%)	0 (0.0%)	22,940,652 (100.0%)
td.mock.1	24,164,345	586,523 (2.4%)	673,149 (2.8%)	0 (0.0%)	0 (0.0%)	24,164,345 (100.0%)
td.mock.2	24,254,761	580,299 (2.4%)	680,471 (2.8%)	0 (0.0%)	0 (0.0%)	24,254,761 (100.0%)
td.mock.3	24,207,919	590,213 (2.4%)	673,287 (2.8%)	0 (0.0%)	0 (0.0%)	24,207,919 (100.0%)