Sample	Total read pairs processed	Read 1 with adapter	Read 2 with adapter	Pairs that were too short	Pairs with too many N	Pairs written (passing filters)
ABA.1	24,089,467	489,965 (2.0%)	581,188 (2.4%)	0 (0.0%)	0 (0.0%)	24,089,467 (100.0%)
ABA.2	24,052,037	490,747 (2.0%)	580,270 (2.4%)	0 (0.0%)	0 (0.0%)	24,052,037 (100.0%)
ABA.3	24,004,402	487,836 (2.0%)	575,039 (2.4%)	0 (0.0%)	0 (0.0%)	24,004,402 (100.0%)
X1.1	24,080,807	487,353 (2.0%)	578,909 (2.4%)	0 (0.0%)	0 (0.0%)	24,080,807 (100.0%)
X1.2	24,088,220	500,391 (2.1%)	594,244 (2.5%)	0 (0.0%)	0 (0.0%)	24,088,220 (100.0%)
X1.3	24,039,135	491,891 (2.0%)	579,260 (2.4%)	0 (0.0%)	0 (0.0%)	24,039,135 (100.0%)
iSB09.1	24,025,389	500,271 (2.1%)	591,763 (2.5%)	0 (0.0%)	0 (0.0%)	24,025,389 (100.0%)
iSB09.2	24,086,619	497,073 (2.1%)	587,250 (2.4%)	0 (0.0%)	0 (0.0%)	24,086,619 (100.0%)
iSB09.3	24,099,566	499,014 (2.1%)	589,066 (2.4%)	0 (0.0%)	0 (0.0%)	24,099,566 (100.0%)
mock.1	24,033,269	496,698 (2.1%)	585,737 (2.4%)	0 (0.0%)	0 (0.0%)	24,033,269 (100.0%)
mock.2	24,031,948	485,977 (2.0%)	580,216 (2.4%)	0 (0.0%)	0 (0.0%)	24,031,948 (100.0%)
mock.3	24,090,490	488,090 (2.0%)	584,504 (2.4%)	0 (0.0%)	0 (0.0%)	24,090,490 (100.0%)