Sample	Total read pairs processed	Read 1 with adapter	Read 2 with adapter	Pairs that were too short	Pairs with too many N	Pairs written (passing filters)
AFR_01	23,788,497	672,169 (2.8%)	679,170 (2.9%)	31,085 (0.1%)	531 (0.0%)	23,756,881 (99.9%)
AFR_02	20,813,689	585,149 (2.8%)	580,524 (2.8%)	27,371 (0.1%)	461 (0.0%)	20,785,857 (99.9%)
ANG_01	20,802,683	610,557 (2.9%)	604,439 (2.9%)	23,079 (0.1%)	480 (0.0%)	20,779,124 (99.9%)
ANG_02	23,168,802	652,511 (2.8%)	649,768 (2.8%)	32,700 (0.1%)	600 (0.0%)	23,135,502 (99.9%)
ANG_03	20,449,968	574,987 (2.8%)	572,293 (2.8%)	24,817 (0.1%)	505 (0.0%)	20,424,646 (99.9%)
ANG_04	20,781,225	595,258 (2.9%)	592,759 (2.9%)	24,343 (0.1%)	471 (0.0%)	20,756,411 (99.9%)
ANG_05	51,698,842	1,301,115 (2.5%)	1,058,871 (2.0%)	239 (0.0%)	20,077 (0.0%)	51,678,526 (100.0%)
CAR_01	23,258,820	648,232 (2.8%)	648,054 (2.8%)	27,610 (0.1%)	516 (0.0%)	23,230,694 (99.9%)
DIP_01	19,283,336	560,575 (2.9%)	560,046 (2.9%)	28,427 (0.1%)	546 (0.0%)	19,254,363 (99.8%)
DIP_02	53,087,768	1,356,205 (2.6%)	1,103,019 (2.1%)	38 (0.0%)	17,905 (0.0%)	53,069,825 (100.0%)
FIC_01	21,002,495	611,492 (2.9%)	608,091 (2.9%)	29,683 (0.1%)	588 (0.0%)	20,972,224 (99.9%)
FIC_02	17,445,202	493,805 (2.8%)	490,787 (2.8%)	21,322 (0.1%)	460 (0.0%)	17,423,420 (99.9%)
FIC_03	21,008,882	604,133 (2.9%)	600,539 (2.9%)	26,211 (0.1%)	602 (0.0%)	20,982,069 (99.9%)
FIC_04	80,495,422	1,987,510 (2.5%)	1,611,521 (2.0%)	73 (0.0%)	8,241 (0.0%)	80,487,108 (100.0%)
GLO_01	16,709,171	504,756 (3.0%)	500,336 (3.0%)	20,567 (0.1%)	457 (0.0%)	16,688,147 (99.9%)
HEP_01	20,249,119	579,101 (2.9%)	584,539 (2.9%)	25,731 (0.1%)	562 (0.0%)	20,222,826 (99.9%)
MAD_01	18,935,475	548,249 (2.9%)	574,848 (3.0%)	22,652 (0.1%)	562 (0.0%)	18,912,261 (99.9%)
MEL_01	24,850,332	788,988 (3.2%)	863,986 (3.5%)	28,409 (0.1%)	740 (0.0%)	24,821,183 (99.9%)
MEM_01	18,235,519	519,604 (2.8%)	518,993 (2.8%)	21,307 (0.1%)	522 (0.0%)	18,213,690 (99.9%)
MET_01	18,211,360	664,657 (3.6%)	786,747 (4.3%)	24,756 (0.1%)	532 (0.0%)	18,186,072 (99.9%)
MET_02	21,094,799	699,458 (3.3%)	819,208 (3.9%)	28,462 (0.1%)	659 (0.0%)	21,065,678 (99.9%)
MET_03	16,722,618	581,975 (3.5%)	702,035 (4.2%)	25,480 (0.2%)	431 (0.0%)	16,696,707 (99.8%)
MEU_01	19,563,214	555,826 (2.8%)	553,654 (2.8%)	27,082 (0.1%)	523 (0.0%)	19,535,609 (99.9%)
MEU_02	20,923,180	598,751 (2.9%)	591,420 (2.8%)	26,040 (0.1%)	597 (0.0%)	20,896,543 (99.9%)
MYR_01	18,694,812	533,616 (2.9%)	532,050 (2.8%)	24,483 (0.1%)	518 (0.0%)	18,669,811 (99.9%)
MYR_02	21,708,518	610,805 (2.8%)	616,078 (2.8%)	27,082 (0.1%)	640 (0.0%)	21,680,796 (99.9%)
MYR_03	19,746,636	560,255 (2.8%)	562,447 (2.8%)	27,522 (0.1%)	592 (0.0%)	19,718,522 (99.9%)
MYR_04	46,586,807	1,170,615 (2.5%)	954,200 (2.0%)	267 (0.0%)	18,691 (0.0%)	46,567,849 (100.0%)
PRO_01	19,969,554	566,958 (2.8%)	561,293 (2.8%)	25,925 (0.1%)	585 (0.0%)	19,943,044 (99.9%)
PRO_02	22,353,595	650,581 (2.9%)	645,302 (2.9%)	20,378 (0.1%)	443 (0.0%)	22,332,774 (99.9%)
PRO_03	22,818,146	647,165 (2.8%)	643,773 (2.8%)	19,482 (0.1%)	417 (0.0%)	22,798,247 (99.9%)
PRO_04	16,840,857	488,227 (2.9%)	487,200 (2.9%)	21,891 (0.1%)	432 (0.0%)	16,818,534 (99.9%)
PRO_05	54,693,116	1,374,974 (2.5%)	1,110,136 (2.0%)	186 (0.0%)	21,925 (0.0%)	54,671,005 (100.0%)
PUS_01	16,719,424	471,701 (2.8%)	468,907 (2.8%)	14,077 (0.1%)	175 (0.0%)	16,705,172 (99.9%)
PUS_02	21,051,205	607,612 (2.9%)	603,172 (2.9%)	24,919 (0.1%)	601 (0.0%)	21,025,685 (99.9%)
SAC_01	20,240,825	617,036 (3.0%)	647,720 (3.2%)	25,784 (0.1%)	632 (0.0%)	20,214,409 (99.9%)
SAG_01	19,929,606	612,365 (3.1%)	609,253 (3.1%)	26,799 (0.1%)	581 (0.0%)	19,902,226 (99.9%)
SAG_02	19,734,143	575,253 (2.9%)	571,429 (2.9%)	27,936 (0.1%)	614 (0.0%)	19,705,593 (99.9%)
ZEY_01	16,607,475	478,662 (2.9%)	475,433 (2.9%)	22,667 (0.1%)	480 (0.0%)	16,584,328 (99.9%)
ZEY_02	58,640,118	1,479,108 (2.5%)	1,191,175 (2.0%)	104 (0.0%)	22,249 (0.0%)	58,617,765 (100.0%)