Sample	Total read pairs processed	Read 1 with adapter	Read 2 with adapter	Pairs that were too short	Pairs with too many N	Pairs written (passing filters)
MM.INF.1	40,124,794	6,905,161 (17.2%)	7,061,317 (17.6%)	112,616 (0.3%)	3,139 (0.0%)	40,009,039 (99.7%)
MM.INF.3	31,874,920	5,358,039 (16.8%)	5,463,127 (17.1%)	88,836 (0.3%)	2,473 (0.0%)	31,783,611 (99.7%)
MM.INF.6	31,199,164	5,334,878 (17.1%)	5,462,976 (17.5%)	75,022 (0.2%)	2,518 (0.0%)	31,121,624 (99.8%)
MM.MOCK.1	34,940,397	6,314,477 (18.1%)	6,394,518 (18.3%)	117,718 (0.3%)	2,896 (0.0%)	34,819,783 (99.7%)
MM.MOCK.4	36,769,639	6,039,969 (16.4%)	6,155,404 (16.7%)	109,936 (0.3%)	2,990 (0.0%)	36,656,713 (99.7%)
MM.MOCK.5	34,663,915	5,071,517 (14.6%)	5,190,483 (15.0%)	108,416 (0.3%)	2,834 (0.0%)	34,552,665 (99.7%)
NagI82.INF.1	30,739,359	5,623,491 (18.3%)	5,741,920 (18.7%)	74,255 (0.2%)	2,534 (0.0%)	30,662,570 (99.8%)
NagI82.INF.2	33,322,511	4,483,425 (13.5%)	4,655,309 (14.0%)	77,784 (0.2%)	2,679 (0.0%)	33,242,048 (99.8%)
NagI82.INF.3	34,965,193	6,546,737 (18.7%)	6,676,722 (19.1%)	93,461 (0.3%)	2,262 (0.0%)	34,869,470 (99.7%)
NagI82.MOCK.1	31,133,363	4,899,473 (15.7%)	4,974,073 (16.0%)	93,795 (0.3%)	2,479 (0.0%)	31,037,089 (99.7%)
NagI82.MOCK.2	37,548,533	6,510,145 (17.3%)	6,608,319 (17.6%)	94,623 (0.3%)	3,021 (0.0%)	37,450,889 (99.7%)
NagI82.MOCK.4	35,013,607	5,768,386 (16.5%)	5,874,179 (16.8%)	81,755 (0.2%)	2,845 (0.0%)	34,929,007 (99.8%)
NagIT1.INF.1	34,546,235	5,296,345 (15.3%)	5,407,027 (15.7%)	114,712 (0.3%)	2,797 (0.0%)	34,428,726 (99.7%)
NagIT1.INF.2	30,778,025	5,107,333 (16.6%)	5,208,206 (16.9%)	100,593 (0.3%)	2,629 (0.0%)	30,674,803 (99.7%)
NagIT1.INF.3	34,452,342	3,646,014 (10.6%)	3,761,903 (10.9%)	135,320 (0.4%)	1,722 (0.0%)	34,315,300 (99.6%)
NagIT1.MOCK.1	36,820,627	5,499,697 (14.9%)	5,619,408 (15.3%)	76,803 (0.2%)	2,428 (0.0%)	36,741,396 (99.8%)
NagIT1.MOCK.2	31,954,146	5,126,246 (16.0%)	5,234,466 (16.4%)	71,128 (0.2%)	2,547 (0.0%)	31,880,471 (99.8%)
NagIT1.MOCK.3	31,276,394	5,824,550 (18.6%)	5,908,027 (18.9%)	83,974 (0.3%)	2,506 (0.0%)	31,189,914 (99.7%)
NahG.INF.1	30,006,679	4,886,787 (16.3%)	4,969,612 (16.6%)	105,725 (0.4%)	2,523 (0.0%)	29,898,431 (99.6%)
NahG.INF.2	36,510,196	5,291,608 (14.5%)	5,438,075 (14.9%)	87,265 (0.2%)	2,411 (0.0%)	36,420,520 (99.8%)
NahG.INF.4	31,321,197	3,960,193 (12.6%)	4,112,257 (13.1%)	74,007 (0.2%)	2,488 (0.0%)	31,244,702 (99.8%)
NahG.MOCK.1	30,714,625	4,016,068 (13.1%)	4,120,995 (13.4%)	73,370 (0.2%)	2,518 (0.0%)	30,638,737 (99.8%)
NahG.MOCK.2	33,827,392	5,748,643 (17.0%)	5,789,374 (17.1%)	167,592 (0.5%)	2,672 (0.0%)	33,657,128 (99.5%)
NahG.MOCK.3	32,572,685	5,785,466 (17.8%)	5,874,643 (18.0%)	102,991 (0.3%)	2,644 (0.0%)	32,467,050 (99.7%)