FastQCFastQC Report
Tue 27 Jan 2026
Col.M.2.R2.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCol.M.2.R2.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24141805
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length66-100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATCTTAAACGTTTTACTTTGTGCTGCACTACTCAACCTCAATGGCCG337170.13966229948423492No Hit
AGAACAATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCC313230.12974589099696562No Hit
CTTAAACGTTTTACTTTGTGCTGCACTACTCAACCTCAATGGCCGCCTCA265290.10988822086832363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)