FastQCFastQC Report
Fri 20 Feb 2026
HP.2.R1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHP.2.R1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22407624
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGACCTCACGCTTGCGGGTGTCGGCGTCGCCCGTGGCGGCGAAGGCCG321200.14334406896509866No Hit
CTCGAACTGGTCCGACGTCACGACGGACGCCACGCCGGCGCGGCCGCCGC231940.10350941268918114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)