##FastQC	0.12.1
>>Basic Statistics	pass
#Measure	Value
Filename	SnRK1a1OE.lowPi.2d.S.3.R2.clean.fq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24094736
Total Bases	3.6 Gbp
Sequences flagged as poor quality	0
Sequence length	59-150
%GC	46
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	36.08702016905269	37.0	35.0	38.0	33.0	39.0
2	35.415987541843165	35.0	34.0	37.0	33.0	39.0
3	35.5495884246252	35.0	35.0	38.0	33.0	39.0
4	35.62158763640324	36.0	35.0	38.0	33.0	39.0
5	35.53468081160964	36.0	35.0	38.0	33.0	39.0
6	35.47834863183394	35.0	35.0	37.0	33.0	39.0
7	35.50839407412474	35.0	34.0	38.0	33.0	39.0
8	35.629506669008535	36.0	35.0	38.0	33.0	39.0
9	35.612067258176225	36.0	35.0	38.0	33.0	39.0
10-14	35.586328117477606	35.8	35.0	37.8	33.0	39.0
15-19	35.56167314719696	36.0	35.0	38.0	33.0	39.0
20-24	35.554830880902784	36.0	35.0	38.0	33.0	39.0
25-29	35.53800908214973	36.0	35.0	38.0	33.0	39.0
30-34	35.52413933898259	36.0	35.0	38.0	33.0	39.0
35-39	35.49472854153704	36.0	35.0	38.0	33.0	39.0
40-44	35.484655826899285	36.0	34.8	38.0	33.0	39.0
45-49	35.45381572140903	36.0	34.0	38.0	33.0	39.0
50-54	35.43657442023851	36.0	34.2	38.0	33.0	39.0
55-59	35.41180721797491	36.0	34.0	38.0	33.0	39.0
60-64	35.37183211496169	36.0	34.0	38.0	32.0	39.0
65-69	35.34542658159247	36.0	34.0	38.0	32.0	39.0
70-74	35.31721624819251	36.0	34.0	38.0	32.0	39.0
75-79	35.268295635603025	36.0	34.0	38.0	32.0	39.0
80-84	35.22875521207201	36.0	34.0	38.0	32.0	39.0
85-89	35.182129601347604	36.0	34.0	38.0	32.0	39.0
90-94	35.1315415148689	36.0	34.0	38.0	32.0	39.0
95-99	35.06635562373811	35.8	34.0	38.0	32.0	39.0
100-104	35.02186221136727	36.0	34.0	38.0	31.8	39.0
105-109	34.96364380369365	35.4	34.0	38.0	31.0	39.0
110-114	34.892458913683704	35.0	34.0	37.8	31.0	39.0
115-119	34.821557910624165	35.0	34.0	37.2	31.0	39.0
120-124	34.75026590688427	35.0	34.0	37.0	31.0	39.0
125-129	34.67565404921727	35.0	34.0	37.0	30.0	39.0
130-134	34.57437671348243	35.0	34.0	37.0	30.0	39.0
135-139	34.52229623937221	35.0	34.0	37.0	30.0	39.0
140-144	34.406507474639845	35.0	34.0	37.0	30.0	39.0
145-149	34.391297170741986	35.0	34.0	37.0	30.0	39.0
150	35.14905476342189	35.0	34.0	37.0	31.0	39.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
20	14.0
21	156.0
22	1417.0
23	7769.0
24	27811.0
25	68579.0
26	136173.0
27	233514.0
28	345638.0
29	457672.0
30	592263.0
31	775967.0
32	1047928.0
33	1474745.0
34	2227353.0
35	3809890.0
36	1.0441604E7
37	2446238.0
38	5.0
>>END_MODULE
>>Per base sequence content	warn
#Base	G	A	T	C
1	32.09942204803572	18.29993074005874	15.720562366817385	33.880084845088156
2	23.03056983068833	25.248236793297924	33.97004225321248	17.75115112280126
3	19.721037823365236	28.889766627864276	30.095955398722772	21.293240150047712
4	23.338288495877276	33.93490594792157	21.58339896315942	21.143406593041732
5	25.489467907015044	34.767116767745456	21.868490279370565	17.874925045868938
6	19.11853277827987	38.45227438889557	22.338493353901036	20.09069947892353
7	20.227098566259453	20.111496552608006	37.383447571286936	22.277957309845604
8	21.562909010499222	23.011731691104647	28.324390024443513	27.100969273952618
9	23.409017637711408	23.160926104357397	27.96891403997952	25.46114221795167
10-14	22.9932770377729	28.465498854189562	25.482590056184883	23.058634051852653
15-19	23.097608539890206	27.63403425544899	26.807153230481546	22.461203974179256
20-24	22.951212248185662	27.560187420190037	26.745748116933093	22.742852214691208
25-29	23.052406135514413	27.156023622753118	26.70798634191302	23.083583899819445
30-34	22.953200234275236	26.890393818799257	26.875247771961476	23.281158174964027
35-39	23.30089277591587	26.697216354642773	26.86942077306844	23.132470096372916
40-44	23.49576438604681	26.31688514868974	26.85565511072626	23.331695354537192
45-49	23.405191905817105	26.08903455094922	26.992381240450197	23.51339230278348
50-54	23.58046089403096	26.115958274039606	26.728697919744793	23.574882912184634
55-59	23.61701327626084	26.084710784961494	26.78007926710631	23.518196671671358
60-64	23.25883744526626	25.98964567146844	26.921641818610098	23.829875064655205
65-69	23.465134941644386	25.89477705705136	26.93706539310262	23.703022608201632
70-74	23.630712170349486	25.866026734742853	26.665830688550248	23.837430406357413
75-79	23.510577223302327	25.94312625413385	26.92445258372989	23.621843938833926
80-84	23.83273157949451	25.974708077477416	26.575149316773683	23.61741102625439
85-89	23.529010064056795	26.101695840983176	26.79407454053141	23.57521955442862
90-94	23.55724655517918	25.813052552018593	26.837498825666522	23.7922020671357
95-99	23.592801869527335	25.965933579823915	26.921092867195938	23.520171683452816
100-104	23.835336416514334	25.7276892446004	26.812632211761645	23.624342127123622
105-109	23.656789126988244	26.01840602843476	26.642707316429753	23.682097528147246
110-114	23.73262156644056	26.091201766971356	26.589279767254915	23.58689689933317
115-119	23.887049786102093	26.21868347467986	26.739473720254658	23.15479301896339
120-124	23.846037603254764	26.403982456691143	26.83270164495873	22.91727829509536
125-129	23.88742266124192	26.413324555891027	26.6379828042932	23.061269978573854
130-134	24.048306742037514	26.447135404512455	26.642752312932032	22.86180554051799
135-139	23.849588551891692	26.47893959961298	26.905143129582758	22.766328718912572
140-144	23.87263448225811	26.62758546621433	26.673822330282785	22.82595772124477
145-149	23.6490875186308	26.855102454135306	26.557275333654612	22.93853469357928
150	23.928117752630904	25.63354782054888	26.7850455271062	23.653288899714017
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	0.0
1	0.0
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.5
8	1.0
9	1.0
10	1.5
11	2.5
12	7.5
13	11.5
14	12.5
15	24.0
16	45.5
17	89.5
18	167.5
19	259.5
20	389.5
21	633.0
22	1001.5
23	1557.5
24	2503.0
25	4150.5
26	6633.0
27	10275.0
28	15610.0
29	22328.0
30	32120.5
31	46816.5
32	68057.0
33	93566.0
34	126469.5
35	182221.0
36	259284.0
37	346734.5
38	455772.0
39	598315.0
40	774451.5
41	962052.5
42	1153594.0
43	1340057.5
44	1485092.0
45	1588323.0
46	1618539.0
47	1579658.5
48	1541200.0
49	1501277.5
50	1391702.0
51	1229630.5
52	1065991.0
53	904077.0
54	754688.0
55	643759.5
56	537715.0
57	434742.5
58	366324.5
59	307668.0
60	240127.0
61	164697.5
62	100611.5
63	60933.5
64	37222.5
65	16893.5
66	8580.5
67	4571.0
68	2254.5
69	1219.5
70	646.0
71	466.0
72	304.5
73	224.5
74	184.0
75	127.5
76	82.0
77	27.5
78	9.0
79	2.0
80	2.5
81	2.0
82	0.0
83	0.0
84	0.0
85	0.0
86	0.0
87	0.0
88	0.0
89	0.0
90	0.0
91	0.0
92	0.0
93	0.0
94	0.0
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	0.0
25-29	0.0
30-34	0.0
35-39	0.0
40-44	0.0
45-49	0.0
50-54	0.0
55-59	0.0
60-64	0.0
65-69	8.300568912692707E-7
70-74	8.300570359581289E-7
75-79	0.0
80-84	0.0
85-89	0.0
90-94	0.0
95-99	0.0
100-104	0.0
105-109	8.30083011870544E-7
110-114	0.0
115-119	0.0
120-124	0.0
125-129	6.641191719350411E-6
130-134	0.05146073112111271
135-139	8.302622968799615E-7
140-144	0.0
145-149	0.0
150	0.0
>>END_MODULE
>>Sequence Length Distribution	warn
#Length	Count
58-59	1.0
60-61	0.0
62-63	1.0
64-65	0.0
66-67	0.0
68-69	2.0
70-71	2.0
72-73	3.0
74-75	5.0
76-77	8.0
78-79	16.0
80-81	13.0
82-83	29.0
84-85	24.0
86-87	31.0
88-89	38.0
90-91	43.0
92-93	49.0
94-95	51.0
96-97	61.0
98-99	68.0
100-101	88.0
102-103	78.0
104-105	98.0
106-107	96.0
108-109	136.0
110-111	151.0
112-113	122.0
114-115	171.0
116-117	175.0
118-119	151.0
120-121	227.0
122-123	282.0
124-125	270.0
126-127	357.0
128-129	396.0
130-131	480.0
132-133	569.0
134-135	882.0
136-137	1398.0
138-139	4694.0
140-141	8560.0
142-143	9336.0
144-145	59139.0
146-147	788251.0
148-149	994171.0
150-151	2.2224013E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Deduplicated Percentage	33.448313535283575
#Duplication Level	Percentage of total
1	24.184527058546852
2	8.195094617068555
3	5.168031469323369
4	3.6284191360549474
5	2.6887023983691036
6	2.1772199059608925
7	1.8259108606240089
8	1.507394844543342
9	1.264100414414529
>10	16.64073363068716
>50	6.046489336271748
>100	13.216243808450107
>500	4.725099651785749
>1k	6.699771649363724
>5k	0.950980163776939
>10k+	1.081281054758724
>>END_MODULE
>>Overrepresented sequences	warn
#Sequence	Count	Percentage	Possible Source
AGAACAATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCC	29874	0.12398558755738183	No Hit
CTTAAACGTTTTACTTTGTGCTGCACTACTCAACCTCAATGGCCGCCTCA	29568	0.122715600619156	No Hit
CAAATCTTAAACGTTTTACTTTGTGCTGCACTACTCAACCTCAATGGCCG	28109	0.11666033609996806	No Hit
GAACAATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCG	24997	0.10374465194389348	No Hit
>>END_MODULE
>>Adapter Content	pass
#Position	Illumina Universal Adapter	Illumina Small RNA 3' Adapter	Illumina Small RNA 5' Adapter	Nextera Transposase Sequence	PolyA	PolyG
1	2.863696037175921E-4	4.150284111849161E-6	0.0	0.0	0.001987986089575748	0.0
2	0.001240934949442899	1.6601136447396644E-5	0.0	0.0	0.009931629879655042	0.0
3	0.0020419397830297873	1.6601136447396644E-5	0.0	0.0	0.014903670245650336	0.0
4	0.005299912810831378	1.6601136447396644E-5	0.0	0.0	0.02280581119461114	0.0
5	0.005532328721094932	1.6601136447396644E-5	0.0	0.0	0.027873308095178965	0.0
6	0.006706859124748244	1.6601136447396644E-5	0.0	0.0	0.035530582281540664	0.0
7	0.009055919932054868	2.0751420559245803E-5	0.0	0.0	0.048396463028273065	0.0
8	0.01781716969216845	2.9051988782944127E-5	0.0	0.0	0.06606422249241493	0.0
9	0.01860157338930794	2.9051988782944127E-5	0.0	0.0	0.07907121289895021	0.0
10-11	0.019421254501398148	3.320227289479329E-5	0.0	0.0	0.1295531936934275	0.0
12-13	0.02030318987516609	3.320227289479329E-5	0.0	0.0	0.15299814864126338	0.0
14-15	0.02355908776091176	3.320227289479329E-5	0.0	0.0	0.16320162213024456	0.0
16-17	0.02748733167277699	3.320227289479329E-5	0.0	0.0	0.17057252671288864	0.0
18-19	0.03667191041229918	3.942769906256703E-5	0.0	0.0	0.17871538414033672	0.0
20-21	0.044105069256621034	4.772826728626535E-5	0.0	0.0	0.1836106442502628	0.0
22-23	0.047267585749850086	6.225426167773741E-5	4.150284111849161E-6	0.0	0.18882547623680127	0.0
24-25	0.0552382063866564	6.225426167773741E-5	4.150284111849161E-6	0.0	0.194088036490626	0.0
26-27	0.06214842943288526	6.225426167773741E-5	4.150284111849161E-6	0.0	0.19817814148285334	0.0
28-29	0.0784963985494591	6.225426167773741E-5	8.300568223698322E-6	0.0	0.2021063853947186	0.0
30-31	0.10972106106495626	6.4329403733662E-5	1.6601136447396644E-5	0.0	0.20626497007479144	0.0
32-33	0.1333797556445524	7.055482990143573E-5	1.6601136447396644E-5	0.0	0.20929467747644132	0.0
34-35	0.1495471874022608	7.47051140132849E-5	1.6601136447396644E-5	0.0	0.2126377313285358	0.0
36-37	0.1516659074413598	7.47051140132849E-5	2.4901704671094965E-5	0.0	0.21459044000316085	0.0
38-39	0.15368917094588627	7.47051140132849E-5	3.1127130838868706E-5	0.0	0.21606794114697914	4.150284111849161E-6
40-41	0.15519572407848753	7.47051140132849E-5	3.735255700664245E-5	0.0	0.21747073717678417	4.150284111849161E-6
42-43	0.15554434794388283	7.47051140132849E-5	3.735255700664245E-5	0.0	0.21892126147387547	4.150284111849161E-6
44-45	0.15658399411390106	7.678025606920948E-5	3.735255700664245E-5	0.0	0.22020162412238092	4.150284111849161E-6
46-47	0.15833126372498957	8.300568223698321E-5	3.735255700664245E-5	0.0	0.2215006630493897	4.150284111849161E-6
48-49	0.1597133083342353	8.715596634883238E-5	3.735255700664245E-5	0.0	0.22263369061192453	4.150284111849161E-6
50-51	0.16090236473228012	8.715596634883238E-5	3.735255700664245E-5	0.0	0.22379784530529823	4.150284111849161E-6
52-53	0.16207689513593343	8.715596634883238E-5	3.735255700664245E-5	0.0	0.2249786011351193	8.300568223698322E-6
54-55	0.16257907951346717	8.715596634883238E-5	3.735255700664245E-5	0.0	0.22608672699298304	1.2450852335547482E-5
56-57	0.16330122894892893	9.130625046068154E-5	3.942769906256703E-5	0.0	0.22707656975365906	1.2450852335547482E-5
58-59	0.1634838414498503	9.338139251660612E-5	4.565312523034077E-5	0.0	0.2279066265760289	1.2450852335547482E-5
60-61	0.16379926304235082	1.0998252896400276E-4	4.565312523034077E-5	0.0	0.22865575285821765	1.2450852335547482E-5
62-63	0.16408978293018028	1.2450852335547482E-4	4.565312523034077E-5	0.0	0.22954598880020932	1.6601136447396644E-5
64-65	0.16413751119746653	1.3488423363509772E-4	4.980340934218993E-5	0.0	0.23040094732725025	1.6601136447396644E-5
66-67	0.16421429145353575	1.4318480185879603E-4	4.980340934218993E-5	0.0	0.23113554761504754	1.6601136447396644E-5
68-69	0.164262019720822	1.4733508597064522E-4	4.980340934218993E-5	0.0	0.23187637332901262	1.6601136447396644E-5
70-71	0.16443010622735188	1.494102280265698E-4	4.980340934218993E-5	0.0	0.23256532049157957	1.6601136447396644E-5
72-73	0.16450896162547704	1.597859383061927E-4	4.980340934218993E-5	0.0	0.23304675344855408	1.6601136447396644E-5
74-75	0.16453593847220405	1.6186108036211726E-4	5.3953693454039095E-5	0.0	0.23370042319617032	1.6601136447396644E-5
76-77	0.16458574188154623	1.6601136447396642E-4	6.225426167773741E-5	0.0	0.23438522007462542	2.0751420559245803E-5
78-79	0.16465214642733583	1.7846221680951392E-4	6.4329403733662E-5	0.0	0.23523602831755452	2.0751420559245803E-5
80-81	0.1647247763992932	1.7846221680951392E-4	6.640454578958658E-5	2.0751420559245805E-6	0.23591252462778592	2.2826562615170382E-5
82-83	0.16475382838807612	1.8261250092136308E-4	7.678025606920948E-5	4.150284111849161E-6	0.2365890209380173	2.4901704671094965E-5
84-85	0.1647766549506913	1.8261250092136308E-4	7.885539812513406E-5	4.150284111849161E-6	0.23733192179403834	2.4901704671094965E-5
86-87	0.16479948151330648	1.8261250092136308E-4	8.300568223698322E-5	4.150284111849161E-6	0.23797729097343087	2.6976846727019547E-5
88-89	0.16484098435442496	1.8468764297728765E-4	8.715596634883238E-5	4.150284111849161E-6	0.2387492438182348	2.9051988782944127E-5
90-91	0.16485966063292828	2.1581477381615635E-4	8.715596634883238E-5	4.150284111849161E-6	0.23926595419016003	2.9051988782944127E-5
92-93	0.16486381091704014	2.2826562615170385E-4	8.715596634883238E-5	4.150284111849161E-6	0.23972871086863123	3.1127130838868706E-5
94-95	0.16490531375815864	2.3241591026355299E-4	8.715596634883238E-5	4.150284111849161E-6	0.24038653090035933	3.735255700664245E-5
96-97	0.16491568946843826	2.4071647848725132E-4	8.715596634883238E-5	4.150284111849161E-6	0.24100907351713668	3.942769906256703E-5
98-99	0.16493851603105342	2.448667625991005E-4	8.715596634883238E-5	8.300568223698322E-6	0.24150918275261452	4.1502841118491606E-5
100-101	0.16496756801983636	2.469419046550251E-4	8.715596634883238E-5	8.300568223698322E-6	0.24201344227220417	4.1502841118491606E-5
102-103	0.1649800188721719	2.4901704671094965E-4	9.130625046068153E-5	8.300568223698322E-6	0.24254882892263274	4.1502841118491606E-5
104-105	0.1649883194403956	2.4901704671094965E-4	9.54565345725307E-5	8.300568223698322E-6	0.24309251614128496	4.1502841118491606E-5
106-107	0.16502359685534634	2.6976846727019545E-4	9.54565345725307E-5	8.300568223698322E-6	0.24358017452442726	4.1502841118491606E-5
108-109	0.1650464234179615	2.7391875138204464E-4	9.54565345725307E-5	8.300568223698322E-6	0.2440595323393458	4.1502841118491606E-5
110-111	0.16507755054880036	2.8636960371759205E-4	9.54565345725307E-5	8.300568223698322E-6	0.24459906927388622	4.1502841118491606E-5
112-113	0.16509000140113592	2.9467017194129044E-4	9.54565345725307E-5	8.300568223698322E-6	0.2451406813504825	4.1502841118491606E-5
114-115	0.16509000140113592	2.96745313997215E-4	9.54565345725307E-5	8.300568223698322E-6	0.24563249001773665	4.357798317441619E-5
116-117	0.16510037711141556	3.0089559810906415E-4	9.54565345725307E-5	8.300568223698322E-6	0.24614089982143816	4.565312523034077E-5
118-119	0.1651066025375833	3.029707401649887E-4	9.54565345725307E-5	8.300568223698322E-6	0.2466244079204686	4.565312523034077E-5
120-121	0.165114903105807	3.071210242768379E-4	9.54565345725307E-5	8.300568223698322E-6	0.2470954651671635	4.565312523034077E-5
122-123	0.16511905338991886	3.091961663327625E-4	9.54565345725307E-5	8.300568223698322E-6	0.24756444727180243	4.772826728626535E-5
124-125	0.16512735395814254	3.1334645044461167E-4	9.960681868437986E-5	1.0375710279622903E-5	0.24805210565494473	4.980340934218993E-5
126-127	0.16513565452636625	3.195718766123854E-4	9.960681868437986E-5	1.2450852335547482E-5	0.24858749230537325	5.395369345403909E-5
128-129	0.16513772966842216	3.237221607242345E-4	9.960681868437986E-5	1.2450852335547482E-5	0.24923908691093358	5.602883550996367E-5
130-131	0.16515225566281366	3.382481551157066E-4	9.960681868437986E-5	1.2450852335547482E-5	0.2498803058062143	5.810397756588825E-5
132-133	0.1651813076515966	3.4447358128348037E-4	9.960681868437986E-5	1.2450852335547482E-5	0.25043436873514613	5.810397756588825E-5
134-135	0.16519583364598805	3.506990074512541E-4	9.960681868437986E-5	1.2450852335547482E-5	0.25098843166407797	5.810397756588825E-5
136-137	0.1652062093562677	3.5277414950717864E-4	9.960681868437986E-5	1.2450852335547482E-5	0.25152589345656245	5.810397756588825E-5
138-139	0.1652062093562677	3.6730014389865074E-4	9.960681868437986E-5	1.4525994391472063E-5	0.2520384535443758	6.017911962181283E-5
>>END_MODULE
