FastQCFastQC Report
Mon 25 May 2026
Ch.hfr1.01h.2.R2.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCh.hfr1.01h.2.R2.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22153843
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length53-150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAAAATATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTCGCCTCTC806100.3638646351335071No Hit
GAAAAAGTAGTAGTAATGGCTTCCTCTATGCTCTCCTCCGCCGCTGTGGT396690.17906148382472512No Hit
AGAAAAAGTAGTAGTAATGGCTTCCTCTATGCTCTCCTCCGCCGCTGTGG319400.14417363163582952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)