Sample	Total read pairs processed	Read 1 with adapter	Read 2 with adapter	Pairs that were too short	Pairs with too many N	Pairs written (passing filters)
WT.1D.control.1	24,228,372	725,308 (3.0%)	864,934 (3.6%)	2 (0.0%)	0 (0.0%)	24,228,370 (100.0%)
WT.1D.control.2	24,142,132	751,330 (3.1%)	829,985 (3.4%)	0 (0.0%)	0 (0.0%)	24,142,132 (100.0%)
WT.1D.control.3	24,114,557	727,528 (3.0%)	851,396 (3.5%)	0 (0.0%)	0 (0.0%)	24,114,557 (100.0%)
WT.1D.weight.1	24,138,069	734,974 (3.0%)	879,221 (3.6%)	0 (0.0%)	0 (0.0%)	24,138,069 (100.0%)
WT.1D.weight.2	24,227,653	739,797 (3.1%)	878,978 (3.6%)	0 (0.0%)	0 (0.0%)	24,227,653 (100.0%)
WT.1D.weight.3	24,222,542	725,264 (3.0%)	870,718 (3.6%)	0 (0.0%)	0 (0.0%)	24,222,542 (100.0%)
WT.3D.control.1	24,201,670	728,644 (3.0%)	847,708 (3.5%)	0 (0.0%)	0 (0.0%)	24,201,670 (100.0%)
WT.3D.control.2	24,118,486	720,150 (3.0%)	839,121 (3.5%)	0 (0.0%)	0 (0.0%)	24,118,486 (100.0%)
WT.3D.control.3	24,260,693	732,646 (3.0%)	852,597 (3.5%)	0 (0.0%)	0 (0.0%)	24,260,693 (100.0%)
WT.3D.weight.1	24,120,905	742,204 (3.1%)	852,257 (3.5%)	0 (0.0%)	0 (0.0%)	24,120,905 (100.0%)
WT.3D.weight.2	24,157,241	723,544 (3.0%)	853,834 (3.5%)	0 (0.0%)	0 (0.0%)	24,157,241 (100.0%)
WT.3D.weight.3	24,085,296	732,438 (3.0%)	843,882 (3.5%)	0 (0.0%)	0 (0.0%)	24,085,296 (100.0%)
pin3.4.1D.control.1	21,941,567	672,645 (3.1%)	769,716 (3.5%)	0 (0.0%)	0 (0.0%)	21,941,567 (100.0%)
pin3.4.1D.control.2	24,193,122	735,375 (3.0%)	852,236 (3.5%)	0 (0.0%)	0 (0.0%)	24,193,122 (100.0%)
pin3.4.1D.control.3	24,201,444	722,838 (3.0%)	854,505 (3.5%)	0 (0.0%)	0 (0.0%)	24,201,444 (100.0%)
pin3.4.1D.weight.1	24,128,607	741,187 (3.1%)	855,020 (3.5%)	0 (0.0%)	0 (0.0%)	24,128,607 (100.0%)
pin3.4.1D.weight.2	24,277,624	738,534 (3.0%)	856,514 (3.5%)	0 (0.0%)	0 (0.0%)	24,277,624 (100.0%)
pin3.4.1D.weight.3	24,102,825	745,098 (3.1%)	838,137 (3.5%)	0 (0.0%)	0 (0.0%)	24,102,825 (100.0%)
pin3.4.3D.control.1	24,151,172	737,105 (3.1%)	844,494 (3.5%)	0 (0.0%)	0 (0.0%)	24,151,172 (100.0%)
pin3.4.3D.control.2	24,287,996	724,071 (3.0%)	855,267 (3.5%)	0 (0.0%)	0 (0.0%)	24,287,996 (100.0%)
pin3.4.3D.control.3	24,220,045	723,824 (3.0%)	846,370 (3.5%)	0 (0.0%)	0 (0.0%)	24,220,045 (100.0%)
pin3.4.3D.weight.1	24,224,168	724,939 (3.0%)	862,481 (3.6%)	0 (0.0%)	0 (0.0%)	24,224,168 (100.0%)
pin3.4.3D.weight.2	24,248,504	735,494 (3.0%)	861,041 (3.6%)	1 (0.0%)	0 (0.0%)	24,248,503 (100.0%)
pin3.4.3D.weight.3	24,147,127	727,634 (3.0%)	855,999 (3.5%)	0 (0.0%)	0 (0.0%)	24,147,127 (100.0%)