Sample	Total read pairs processed	Read 1 with adapter	Read 2 with adapter	Pairs that were too short	Pairs with too many N	Pairs written (passing filters)
C112.WaterStress.1	22,009,288	1,013,369 (4.6%)	1,119,630 (5.1%)	18,349 (0.1%)	500 (0.0%)	21,990,439 (99.9%)
C112.WaterStress.2	22,404,291	1,060,913 (4.7%)	1,165,505 (5.2%)	19,103 (0.1%)	593 (0.0%)	22,384,595 (99.9%)
C112.WaterStress.3	21,589,951	979,558 (4.5%)	1,082,607 (5.0%)	19,170 (0.1%)	546 (0.0%)	21,570,235 (99.9%)
C112.WaterStress.4	21,466,869	1,178,092 (5.5%)	1,274,411 (5.9%)	20,073 (0.1%)	571 (0.0%)	21,446,225 (99.9%)
C112.control.1	23,202,561	977,813 (4.2%)	1,093,241 (4.7%)	23,499 (0.1%)	498 (0.0%)	23,178,564 (99.9%)
C112.control.2	22,932,783	1,028,248 (4.5%)	1,133,603 (4.9%)	20,152 (0.1%)	594 (0.0%)	22,912,037 (99.9%)
C112.control.3	22,718,496	866,461 (3.8%)	973,883 (4.3%)	18,216 (0.1%)	528 (0.0%)	22,699,752 (99.9%)
C112.control.4	22,783,888	999,874 (4.4%)	1,107,264 (4.9%)	21,021 (0.1%)	526 (0.0%)	22,762,341 (99.9%)
C231.WaterStress.1	23,591,658	980,470 (4.2%)	1,101,587 (4.7%)	23,148 (0.1%)	608 (0.0%)	23,567,902 (99.9%)
C231.WaterStress.2	27,794,922	1,185,889 (4.3%)	1,334,374 (4.8%)	24,636 (0.1%)	647 (0.0%)	27,769,639 (99.9%)
C231.WaterStress.3	23,522,856	949,114 (4.0%)	1,071,865 (4.6%)	21,937 (0.1%)	590 (0.0%)	23,500,329 (99.9%)
C231.WaterStress.4	25,485,829	1,031,671 (4.0%)	1,155,062 (4.5%)	21,865 (0.1%)	575 (0.0%)	25,463,389 (99.9%)
C231.control.1	27,660,023	1,401,065 (5.1%)	1,493,903 (5.4%)	27,771 (0.1%)	793 (0.0%)	27,631,459 (99.9%)
C231.control.2	22,508,494	948,695 (4.2%)	1,042,210 (4.6%)	22,451 (0.1%)	560 (0.0%)	22,485,483 (99.9%)
C231.control.3	23,659,310	1,030,520 (4.4%)	1,132,372 (4.8%)	21,511 (0.1%)	586 (0.0%)	23,637,213 (99.9%)
C231.control.4	22,620,207	966,567 (4.3%)	1,070,121 (4.7%)	18,401 (0.1%)	533 (0.0%)	22,601,273 (99.9%)