BLASTN 2.6.0+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: /home/jforment/biovice/data/Solanum_chilense/Stam_et_al_2019/Solanum
_chilense.LA2750_leaf.transcriptome.fasta
35,254 sequences; 33,111,747 total letters
Query= SL2.50ch06:34762015..34764430
Length=2416
Score E
Sequences producing significant alignments: (Bits) Value
TrinityLA2750trinc53839_g1_i1 type=cds; aalen=436,63%,complete; ... 977 0.0
>TrinityLA2750trinc53839_g1_i1 type=cds; aalen=436,63%,complete; clen=2065; strand=-; offs=1733-423;
evgclass=main,okay,match:SOAPLA2750soap833115,pct:100/94/.;
Length=1311
Score = 977 bits (529), Expect = 0.0
Identities = 555/567 (98%), Gaps = 3/567 (1%)
Strand=Plus/Plus
Query 298 ATGGCAAGTTGGGTTCTATCAGAATGTGGTTTAAGACCACTACCAAAAATATACCCAAAG 357
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGCAAGTTGGGTTCTATCAGAATGTGGTCTAAGACCACTACCAAAAATATACCCAAAG 60
Query 358 CCTACAATAGGTTTTTCTTCTTCCGTTTCTGTTTCCGCCACCAGTTTGAATTTGAGAAGA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTACAATAGGTTTTTCTTCTTCCGTTTCTGTTTCCGCCACCAGTTTGAATTTGAGAAGA 120
Query 418 ATTTCACCTTCACCTATACGAACAGATCGGAATTGTTGGGCATTGAGGGTAAGTGCACCG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTTCACCTTCACCTATACGAACAGATCGGAATTGTTGGGCATTGAGGGTAAGTGCACCG 180
Query 478 CTTAGGATCCAAATTGCCGGAGAAGAAGAGGA--AC-AAACAACAAACAATGGGGATGAG 534
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 181 CTTAGGATCCAAATTGCCGGAGAAGAAGAGGAGGAAAAAACAACAAACAATGGGGATGAG 240
Query 535 TTTTTTGACCCAGGGGCACCACCCCCTTTTAAGCTTTCTGATATTAAGGCAGCTATTCCT 594
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTTTTGACCCAGGAGCACCACCCCCTTTTAAGCTTTCTGATATTAAGGCAGCTATTCCT 300
Query 595 AAGCATTGTTGGGTCAAAAATCCATGGACGTCCATGAGTTATGTTGTTAGAGATGTAGCT 654
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 AAGCATTGTTGGGTCAAAAATCCATGGACATCCATGAGTTATGTTGTTAGAGATGTAGCT 360
Query 655 ATTGTGTTTGGGCTGGCGGCTGCTGCTGCTTATTTCAACAATTGGCTTGTTTGGCCTCTT 714
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTGTGTTTGGGCTGGCGGCGGCTGCTGCTTATTTCAACAATTGGCTTGTTTGGCCTCTT 420
Query 715 TATTGGTTTGCTCAGAGTACAATGTTTTGGGCTCTCTTTGTTCTAGGTCATGATTGTGGA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TATTGGTTTGCTCAGAGTACAATGTTTTGGGCTCTCTTTGTTCTAGGTCATGATTGTGGA 480
Query 775 CATGGAAGCTTTTCAAATAACCATAGCTTGAATAGCGTTGCTGGACATATTCTTCATTCT 834
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CATGGAAGCTTTTCGAATAACCATAGCTTGAATAGCGTTGCTGGACATATTCTTCATTCT 540
Query 835 TCGATTCTTGTTCCTTATCATGGATGG 861
|| ||||| ||||||||||||||||||
Sbjct 541 TCAATTCTGGTTCCTTATCATGGATGG 567
Score = 348 bits (188), Expect = 1e-94
Identities = 188/188 (100%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 1259 GTGGGGTAGAAGTCCGGGAAAGAAAGGTTCTCACTTTGATCCAAACAGTGATTTGTTTGT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 GTGGGGTAGAAGTCCGGGAAAGAAAGGTTCTCACTTTGATCCAAACAGTGATTTGTTTGT 785
Query 1319 GGCAAGTGAGAAGAAAGATGTGATCACTTCAACTGTCTGCTGGACGGCAATGGCTGCATT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 GGCAAGTGAGAAGAAAGATGTGATCACTTCAACTGTCTGCTGGACGGCAATGGCTGCATT 845
Query 1379 GCTTGTAGGATTGTCCTTTGTCATGGGTCCTCTTCAAATGCTTAAGCTTTATGGCATCCC 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GCTTGTAGGATTGTCCTTTGTCATGGGTCCTCTTCAAATGCTTAAGCTTTATGGCATCCC 905
Query 1439 CTATTGGG 1446
||||||||
Sbjct 906 CTATTGGG 913
Score = 333 bits (180), Expect = 3e-90
Identities = 183/184 (99%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 2010 GCAGACTGAAGCTGCTAAACCAGTGTTAGGGAAATATTATAAGGAGCCAAAGAAGTCAGG 2069
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 GCA-ACTGAAGCTGCTAAACCAGTGTTAGGGAAATATTATAAGGAGCCAAAGAAGTCAGG 1187
Query 2070 GCCTCTACCATTTTACTTGTTGGGATATCTGATAAGAAGCATGAAGGAGGATCACTTTGT 2129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GCCTCTACCATTTTACTTGTTGGGATATCTGATAAGAAGCATGAAGGAGGATCACTTTGT 1247
Query 2130 GAGTGACACAGGGAATGTAGTATATTATGAAACTGATCCCAACCTTTATGGGTCTAAGAA 2189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 GAGTGACACAGGGAATGTAGTATATTATGAAACTGATCCCAACCTTTATGGGTCTAAGAA 1307
Query 2190 ATAG 2193
||||
Sbjct 1308 ATAG 1311
Score = 259 bits (140), Expect = 5e-68
Identities = 140/140 (100%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 1793 AGGAATGGAGTTATCTGAGAGGAGGGCTTACAACACTTGATCGTGACTATGGATGGATTA 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 AGGAATGGAGTTATCTGAGAGGAGGGCTTACAACACTTGATCGTGACTATGGATGGATTA 1051
Query 1853 ACAACATCCACCATGACATAGGGACTCATGTGATACATCATCTCTTCCCTCAAATCCCAC 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 ACAACATCCACCATGACATAGGGACTCATGTGATACATCATCTCTTCCCTCAAATCCCAC 1111
Query 1913 ACTATCATTTGGTAGAAGCA 1932
||||||||||||||||||||
Sbjct 1112 ACTATCATTTGGTAGAAGCA 1131
Score = 172 bits (93), Expect = 7e-42
Identities = 93/93 (100%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 1086 TTATCTGAGAAGCTTTACAATAGTTTGGATGATATCACAAAGAAATTTAGGTTCACTCTA 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TTATCTGAGAAGCTTTACAATAGTTTGGATGATATCACAAAGAAATTTAGGTTCACTCTA 693
Query 1146 CCCTTTCCCTTGCTGGCATATCCTTTCTATCTG 1178
|||||||||||||||||||||||||||||||||
Sbjct 694 CCCTTTCCCTTGCTGGCATATCCTTTCTATCTG 726
Score = 154 bits (83), Expect = 3e-36
Identities = 83/83 (100%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 1523 GGGCTTTGTCATATGGCTGGATTTAGTTACCTATTTGCATCACCATGGCCATGAAGATAA 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GGGCTTTGTCATATGGCTGGATTTAGTTACCTATTTGCATCACCATGGCCATGAAGATAA 971
Query 1583 AGTTCCTTGGTACAGAGGAGAGG 1605
|||||||||||||||||||||||
Sbjct 972 AGTTCCTTGGTACAGAGGAGAGG 994
Score = 126 bits (68), Expect = 6e-28
Identities = 68/68 (100%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 935 GGAGAATAAGCCACAGAACTCATCATCAGAACCATGGACATGTTGAGAATGATGAATCAT 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GGAGAATAAGCCACAGAACTCATCATCAGAACCATGGACATGTTGAGAATGATGAATCAT 625
Query 995 GGCATCCT 1002
||||||||
Sbjct 626 GGCATCCT 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76946391770
Database: /home/jforment/biovice/data/Solanum_chilense/Stam_et_al_2019/Solanum
_chilense.LA2750_leaf.transcriptome.fasta
Posted date: Feb 4, 2020 11:54 AM
Number of letters in database: 33,111,747
Number of sequences in database: 35,254
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5