BLASTN 2.6.0+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: /home/jforment/biovice/data/Solanum_chilense/Stam_et_al_2019/Solanum
_chilense.LA3111_leaf.transcriptome.fasta
53,670 sequences; 45,262,713 total letters
Query= SL2.50ch06:34762015..34764430
Length=2416
Score E
Sequences producing significant alignments: (Bits) Value
LA3111velvLoc2089d89958t2 type=cds; aalen=255,81%,partial5; clen... 1085 0.0
LA3111velvLoc2089d89957t1 type=cds; aalen=255,81%,partial5; clen... 1085 0.0
LA3111velvLoc2089d89960t4 type=cds; aalen=290,99%,partial; clen=... 996 0.0
LA3111velvLoc2089d89959t3 type=cds; aalen=287,90%,partial5; clen... 996 0.0
LA3111velvLoc91717t1 type=cds; aalen=58,91%,complete; clen=193; ... 111 2e-23
>LA3111velvLoc2089d89958t2 type=cds; aalen=255,81%,partial5; clen=946; strand=-; offs=945-178;
evgclass=althi1,okay,match:TrinityLA3111trinc69817_g1_i1,pct:99/74/./TrinityLA3111trinc69817_g1_i2;
Length=768
Score = 1085 bits (587), Expect = 0.0
Identities = 630/650 (97%), Gaps = 5/650 (1%)
Strand=Plus/Plus
Query 273 ATCTCTCTTCTTCTCCCTAACTAAAATGGCAAGTTGGGTTCTATCAGAATGTGGTTTAAG 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 ATCTCTCTTCTTCTCCCTAACTAAAATGGCAAGTTGGGTTCTATCAGAATGTGGTCTAAG 179
Query 333 ACCACTACCAAAAATATACCCAAAGCCTACAATAGGTTTTTCTTCTTCCGTTTCTGTTTC 392
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 ACCACTACCAAAAATATACCCAAAGCCTACAATTGGTTTTTCTTCTTCCGTTTCTGTTTC 239
Query 393 CGCCACCAGTTTGAATTTGAGAAGAATTTCACCTTCACCTATACGAACAGATCGGAATTG 452
||| || ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 CGCAACAAGTTTAAATCTGAGAAGGATTTCACCTTCACCTATACGAACAGATCGGAATTG 299
Query 453 TTGGGCATTGAGGGTAAGTGCACCGCTTAGGATCCAAATTGCCGGAGAAGAA---GAGGA 509
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TTGGGCATTGAGGGTAAGTGCACCGCTTAGGATCCAAATTGCCGGAGAAGAAGAGGAGGA 359
Query 510 ACAAACAACAAACAATGGGGATGAGTTTTTTGACCCAGGGGCACCACCCCCTTTTAAGCT 569
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAAAACAACAAACAATGGGGATGAGTTTTTTGACCCAGGGGCACCACCCCCTTTTAAGCT 419
Query 570 TTCTGATATTAAGGCAGCTATTCCTAAGCATTGTTGGGTCAAAAATCCATGGACGTCCAT 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 TTCTGATATTAAGGCAGCTATTCCTAAGCATTGTTGGGTCAAAAATCCATGGACATCCAT 479
Query 630 GAGTTATGTTGTTAGAGATGTAGCTATTGTGTTTGGGCTGGCGGCTGCTGCTGCTTATTT 689
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 480 GAGTTATGTTGTTAGAGATGTAGCTGTTGTGTTTGGGCTGGCGGCGGCTGCTGCTTATTT 539
Query 690 CAACAATTGGCTTGTTTGGCCTCTTTATTGGTTTGCTCAGAGTACAATGTTTTGGGCTCT 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAACAATTGGCTTGTTTGGCCTCTTTATTGGTTTGCTCAGAGTACAATGTTTTGGGCTCT 599
Query 750 CTTTGTTCTAGGTCATGATTGTGGACATGGAAGCTTTTCAAATAACCATAGCTTGAATAG 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTTGTTCTAGGTCATGATTGTGGACATGGAAGCTTTTCAAATAACCATAGCTTGAATAG 659
Query 810 CGTTGCTGGACATATTCTTCATTCTTCGATTCTTGTTCCTTATCATGGATGGTTCGTTTT 869
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 660 CGTTGCTGGACATATTCTTCATTCGTCAATTCTGGTTCCTTATCATGGATGGTTCGTTTT 719
Query 870 G-TTTTGAAGGAATTTTATTTATTCAAAATCGTATTTTAGTTTTGATTGA 918
| ||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 GGTTTTG-AGGAATTTTATTTATTCAAAATCGTATTTTATTTTTGATTGA 768
Score = 106 bits (57), Expect = 1e-21
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 305 GTTGGGTTCTATCAGAATGTGGTTTAAGACCACTACCAAAAATATACCCAAAGCCTACAA 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 103 GTTGGGTTCTATCAGAATGTGGTCTAAGACCACTACCAAAAATATACCCAAAGCCTACAA 44
Score = 80.5 bits (43), Expect = 6e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 329 TAAGACCACTACCAAAAATATACCCAAAGCCTACAATAGGTTT 371
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TAAGACCACTACCAAAAATATACCCAAAGCCTACAATAGGTTT 45
>LA3111velvLoc2089d89957t1 type=cds; aalen=255,81%,partial5; clen=946; strand=-; offs=945-178;
evgclass=althi1,okay,match:TrinityLA3111trinc69817_g1_i1,pct:99/74/./TrinityLA3111trinc69817_g1_i2;
Length=768
Score = 1085 bits (587), Expect = 0.0
Identities = 630/650 (97%), Gaps = 5/650 (1%)
Strand=Plus/Plus
Query 273 ATCTCTCTTCTTCTCCCTAACTAAAATGGCAAGTTGGGTTCTATCAGAATGTGGTTTAAG 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 ATCTCTCTTCTTCTCCCTAACTAAAATGGCAAGTTGGGTTCTATCAGAATGTGGTCTAAG 179
Query 333 ACCACTACCAAAAATATACCCAAAGCCTACAATAGGTTTTTCTTCTTCCGTTTCTGTTTC 392
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 ACCACTACCAAAAATATACCCAAAGCCTACAATTGGTTTTTCTTCTTCCGTTTCTGTTTC 239
Query 393 CGCCACCAGTTTGAATTTGAGAAGAATTTCACCTTCACCTATACGAACAGATCGGAATTG 452
||| || ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 CGCAACAAGTTTAAATCTGAGAAGGATTTCACCTTCACCTATACGAACAGATCGGAATTG 299
Query 453 TTGGGCATTGAGGGTAAGTGCACCGCTTAGGATCCAAATTGCCGGAGAAGAA---GAGGA 509
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TTGGGCATTGAGGGTAAGTGCACCGCTTAGGATCCAAATTGCCGGAGAAGAAGAGGAGGA 359
Query 510 ACAAACAACAAACAATGGGGATGAGTTTTTTGACCCAGGGGCACCACCCCCTTTTAAGCT 569
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAAAACAACAAACAATGGGGATGAGTTTTTTGACCCAGGGGCACCACCCCCTTTTAAGCT 419
Query 570 TTCTGATATTAAGGCAGCTATTCCTAAGCATTGTTGGGTCAAAAATCCATGGACGTCCAT 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 TTCTGATATTAAGGCAGCTATTCCTAAGCATTGTTGGGTCAAAAATCCATGGACATCCAT 479
Query 630 GAGTTATGTTGTTAGAGATGTAGCTATTGTGTTTGGGCTGGCGGCTGCTGCTGCTTATTT 689
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 480 GAGTTATGTTGTTAGAGATGTAGCTGTTGTGTTTGGGCTGGCGGCGGCTGCTGCTTATTT 539
Query 690 CAACAATTGGCTTGTTTGGCCTCTTTATTGGTTTGCTCAGAGTACAATGTTTTGGGCTCT 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAACAATTGGCTTGTTTGGCCTCTTTATTGGTTTGCTCAGAGTACAATGTTTTGGGCTCT 599
Query 750 CTTTGTTCTAGGTCATGATTGTGGACATGGAAGCTTTTCAAATAACCATAGCTTGAATAG 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTTGTTCTAGGTCATGATTGTGGACATGGAAGCTTTTCAAATAACCATAGCTTGAATAG 659
Query 810 CGTTGCTGGACATATTCTTCATTCTTCGATTCTTGTTCCTTATCATGGATGGTTCGTTTT 869
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 660 CGTTGCTGGACATATTCTTCATTCTTCAATTCTGGTTCCTTATCATGGATGGTTAGTTTT 719
Query 870 G-TTTTGAAGGAATTTTATTTATTCAAAATCGTATTTTAGTTTTGATTGA 918
| ||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 GGTTTTG-AGGAATTTTATTTATTCAAAATCGTATTTTATTTTTGATTGA 768
Score = 106 bits (57), Expect = 1e-21
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 305 GTTGGGTTCTATCAGAATGTGGTTTAAGACCACTACCAAAAATATACCCAAAGCCTACAA 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 103 GTTGGGTTCTATCAGAATGTGGTCTAAGACCACTACCAAAAATATACCCAAAGCCTACAA 44
Score = 80.5 bits (43), Expect = 6e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 329 TAAGACCACTACCAAAAATATACCCAAAGCCTACAATAGGTTT 371
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TAAGACCACTACCAAAAATATACCCAAAGCCTACAATAGGTTT 45
>LA3111velvLoc2089d89960t4 type=cds; aalen=290,99%,partial; clen=871; strand=-; offs=870-1;
evgclass=althi,okay,match:TrinityLA3111trinc69817_g1_i1,pct:99/83/./TrinityLA3111trinc69817_g1_i2;
Length=870
Score = 996 bits (539), Expect = 0.0
Identities = 575/592 (97%), Gaps = 3/592 (1%)
Strand=Plus/Plus
Query 273 ATCTCTCTTCTTCTCCCTAACTAAAATGGCAAGTTGGGTTCTATCAGAATGTGGTTTAAG 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 ATCTCTCTTCTTCTCCCTAACTAAAATGGCAAGTTGGGTTCTATCAGAATGTGGTCTAAG 179
Query 333 ACCACTACCAAAAATATACCCAAAGCCTACAATAGGTTTTTCTTCTTCCGTTTCTGTTTC 392
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 ACCACTACCAAAAATATACCCAAAGCCTACAATTGGTTTTTCTTCTTCCGTTTCTGTTTC 239
Query 393 CGCCACCAGTTTGAATTTGAGAAGAATTTCACCTTCACCTATACGAACAGATCGGAATTG 452
||| || ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 CGCAACAAGTTTAAATCTGAGAAGGATTTCACCTTCACCTATACGAACAGATCGGAATTG 299
Query 453 TTGGGCATTGAGGGTAAGTGCACCGCTTAGGATCCAAATTGCCGGAGAAGAA---GAGGA 509
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TTGGGCATTGAGGGTAAGTGCACCGCTTAGGATCCAAATTGCCGGAGAAGAAGAGGAGGA 359
Query 510 ACAAACAACAAACAATGGGGATGAGTTTTTTGACCCAGGGGCACCACCCCCTTTTAAGCT 569
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAAAACAACAAACAATGGGGATGAGTTTTTTGACCCAGGGGCACCACCCCCTTTTAAGCT 419
Query 570 TTCTGATATTAAGGCAGCTATTCCTAAGCATTGTTGGGTCAAAAATCCATGGACGTCCAT 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 TTCTGATATTAAGGCAGCTATTCCTAAGCATTGTTGGGTCAAAAATCCATGGACATCCAT 479
Query 630 GAGTTATGTTGTTAGAGATGTAGCTATTGTGTTTGGGCTGGCGGCTGCTGCTGCTTATTT 689
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 480 GAGTTATGTTGTTAGAGATGTAGCTGTTGTGTTTGGGCTGGCGGCGGCTGCTGCTTATTT 539
Query 690 CAACAATTGGCTTGTTTGGCCTCTTTATTGGTTTGCTCAGAGTACAATGTTTTGGGCTCT 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAACAATTGGCTTGTTTGGCCTCTTTATTGGTTTGCTCAGAGTACAATGTTTTGGGCTCT 599
Query 750 CTTTGTTCTAGGTCATGATTGTGGACATGGAAGCTTTTCAAATAACCATAGCTTGAATAG 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTTGTTCTAGGTCATGATTGTGGACATGGAAGCTTTTCAAATAACCATAGCTTGAATAG 659
Query 810 CGTTGCTGGACATATTCTTCATTCTTCGATTCTTGTTCCTTATCATGGATGG 861
||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 660 CGTTGCTGGACATATTCTTCATTCTTCAATACTGGTTCCTTATCATGGATGG 711
Score = 172 bits (93), Expect = 1e-41
Identities = 93/93 (100%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 1086 TTATCTGAGAAGCTTTACAATAGTTTGGATGATATCACAAAGAAATTTAGGTTCACTCTA 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTATCTGAGAAGCTTTACAATAGTTTGGATGATATCACAAAGAAATTTAGGTTCACTCTA 837
Query 1146 CCCTTTCCCTTGCTGGCATATCCTTTCTATCTG 1178
|||||||||||||||||||||||||||||||||
Sbjct 838 CCCTTTCCCTTGCTGGCATATCCTTTCTATCTG 870
Score = 126 bits (68), Expect = 8e-28
Identities = 68/68 (100%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 935 GGAGAATAAGCCACAGAACTCATCATCAGAACCATGGACATGTTGAGAATGATGAATCAT 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GGAGAATAAGCCACAGAACTCATCATCAGAACCATGGACATGTTGAGAATGATGAATCAT 769
Query 995 GGCATCCT 1002
||||||||
Sbjct 770 GGCATCCT 777
Score = 106 bits (57), Expect = 1e-21
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 305 GTTGGGTTCTATCAGAATGTGGTTTAAGACCACTACCAAAAATATACCCAAAGCCTACAA 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 103 GTTGGGTTCTATCAGAATGTGGTCTAAGACCACTACCAAAAATATACCCAAAGCCTACAA 44
Score = 80.5 bits (43), Expect = 6e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 329 TAAGACCACTACCAAAAATATACCCAAAGCCTACAATAGGTTT 371
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TAAGACCACTACCAAAAATATACCCAAAGCCTACAATAGGTTT 45
>LA3111velvLoc2089d89959t3 type=cds; aalen=287,90%,partial5; clen=950; strand=-; offs=949-86;
evgclass=althi,okay,match:TrinityLA3111trinc69817_g1_i1,pct:99/73/./TrinityLA3111trinc69817_g1_i2;
Length=864
Score = 996 bits (539), Expect = 0.0
Identities = 575/592 (97%), Gaps = 3/592 (1%)
Strand=Plus/Plus
Query 273 ATCTCTCTTCTTCTCCCTAACTAAAATGGCAAGTTGGGTTCTATCAGAATGTGGTTTAAG 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 ATCTCTCTTCTTCTCCCTAACTAAAATGGCAAGTTGGGTTCTATCAGAATGTGGTCTAAG 179
Query 333 ACCACTACCAAAAATATACCCAAAGCCTACAATAGGTTTTTCTTCTTCCGTTTCTGTTTC 392
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 ACCACTACCAAAAATATACCCAAAGCCTACAATTGGTTTTTCTTCTTCCGTTTCTGTTTC 239
Query 393 CGCCACCAGTTTGAATTTGAGAAGAATTTCACCTTCACCTATACGAACAGATCGGAATTG 452
||| || ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 CGCAACAAGTTTAAATCTGAGAAGGATTTCACCTTCACCTATACGAACAGATCGGAATTG 299
Query 453 TTGGGCATTGAGGGTAAGTGCACCGCTTAGGATCCAAATTGCCGGAGAAGAA---GAGGA 509
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TTGGGCATTGAGGGTAAGTGCACCGCTTAGGATCCAAATTGCCGGAGAAGAAGAGGAGGA 359
Query 510 ACAAACAACAAACAATGGGGATGAGTTTTTTGACCCAGGGGCACCACCCCCTTTTAAGCT 569
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAAAACAACAAACAATGGGGATGAGTTTTTTGACCCAGGGGCACCACCCCCTTTTAAGCT 419
Query 570 TTCTGATATTAAGGCAGCTATTCCTAAGCATTGTTGGGTCAAAAATCCATGGACGTCCAT 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 TTCTGATATTAAGGCAGCTATTCCTAAGCATTGTTGGGTCAAAAATCCATGGACATCCAT 479
Query 630 GAGTTATGTTGTTAGAGATGTAGCTATTGTGTTTGGGCTGGCGGCTGCTGCTGCTTATTT 689
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 480 GAGTTATGTTGTTAGAGATGTAGCTGTTGTGTTTGGGCTGGCGGCGGCTGCTGCTTATTT 539
Query 690 CAACAATTGGCTTGTTTGGCCTCTTTATTGGTTTGCTCAGAGTACAATGTTTTGGGCTCT 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAACAATTGGCTTGTTTGGCCTCTTTATTGGTTTGCTCAGAGTACAATGTTTTGGGCTCT 599
Query 750 CTTTGTTCTAGGTCATGATTGTGGACATGGAAGCTTTTCAAATAACCATAGCTTGAATAG 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTTGTTCTAGGTCATGATTGTGGACATGGAAGCTTTTCAAATAACCATAGCTTGAATAG 659
Query 810 CGTTGCTGGACATATTCTTCATTCTTCGATTCTTGTTCCTTATCATGGATGG 861
||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 660 CGTTGCTGGACATATTCTTCATTCTTCAATACTGGTTCCTTATCATGGATGG 711
Score = 252 bits (136), Expect = 1e-65
Identities = 152/159 (96%), Gaps = 4/159 (3%)
Strand=Plus/Plus
Query 935 GGAGAATAAGCCACAGAACTCATCATCAGAACCATGGACATGTTGAGAATGATGAATCAT 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GGAGAATAAGCCACAGAACTCATCATCAGAACCATGGACATGTTGAGAATGATGAATCAT 769
Query 995 GGCATCCTGTAAGTTTGTTTGATGTATATTCATTCCACTTGTCAAACAAACTATTTTTCG 1054
|||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct 770 GGCATCCTGTAAGTTTGTTTGATGTATATTCATTCCACTTCTCAAACAAGCTAATTTTCG 829
Query 1055 CCTCTAAATTACCtttttattttttCCCCAGTTATCTGA 1093
||||||||||||||| ||||||||||||||||||||
Sbjct 830 CCTCTAAATTACCTT----TTTTTTCCCCAGTTATCTGA 864
Score = 106 bits (57), Expect = 1e-21
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 305 GTTGGGTTCTATCAGAATGTGGTTTAAGACCACTACCAAAAATATACCCAAAGCCTACAA 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 103 GTTGGGTTCTATCAGAATGTGGTCTAAGACCACTACCAAAAATATACCCAAAGCCTACAA 44
Score = 80.5 bits (43), Expect = 6e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 329 TAAGACCACTACCAAAAATATACCCAAAGCCTACAATAGGTTT 371
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TAAGACCACTACCAAAAATATACCCAAAGCCTACAATAGGTTT 45
>LA3111velvLoc91717t1 type=cds; aalen=58,91%,complete; clen=193; strand=+; offs=17-193;
evgclass=althi,okay,match:LA3111velvLoc91717t2,pct:100/50/-sense;
Length=177
Score = 111 bits (60), Expect = 2e-23
Identities = 80/88 (91%), Gaps = 7/88 (8%)
Strand=Plus/Minus
Query 762 TCATGATTGTGGACATGGAAGCTTTTCA-------AATAACCATAGCTTGAATAGCGTTG 814
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 177 TCATGATTGTGGACATGGAAGCTTTTCACTTTTCAAATAACCATAGCTTGAATAGCGTTG 118
Query 815 CTGGACATATTCTTCATTCTTCGATTCT 842
|||||||||||||||||||||| |||||
Sbjct 117 CTGGACATATTCTTCATTCTTCAATTCT 90
Score = 75.0 bits (40), Expect = 3e-12
Identities = 40/40 (100%), Gaps = 0/40 (0%)
Strand=Plus/Minus
Query 951 AACTCATCATCAGAACCATGGACATGTTGAGAATGATGAA 990
||||||||||||||||||||||||||||||||||||||||
Sbjct 56 AACTCATCATCAGAACCATGGACATGTTGAGAATGATGAA 17
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104842830270
Database: /home/jforment/biovice/data/Solanum_chilense/Stam_et_al_2019/Solanum
_chilense.LA3111_leaf.transcriptome.fasta
Posted date: Feb 4, 2020 11:54 AM
Number of letters in database: 45,262,713
Number of sequences in database: 53,670
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5