BLASTN 2.6.0+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: /home/jforment/biovice/data/Solanum_chilense/Stam_et_al_2019/Solanum
_chilense.scaffolds.fa
81,304 sequences; 913,880,739 total letters
Query= Solyc06g051400.2.1 Omega-3 fatty acid desaturase (AHRD V1 ****
Q7X7I9_SOLLC); contains Interpro domain(s) IPR005804 Fatty acid
desaturase, type 1
Length=1828
Score E
Sequences producing significant alignments: (Bits) Value
scaffold22523 1308 0.0
scaffold20955 671 0.0
>scaffold22523
Length=3684
Score = 1308 bits (708), Expect = 0.0
Identities = 828/881 (94%), Gaps = 27/881 (3%)
Strand=Plus/Plus
Query 1 GAGAGATGTAGGTGGAGGTGAACCTAAAATATTAGTATCACTA-CTGCTAATATAACTAT 59
|||||||||||||||| |||||||||||||||||||||||||| || || ||||||||||
Sbjct 2194 GAGAGATGTAGGTGGACGTGAACCTAAAATATTAGTATCACTAACTACT-ATATAACTAT 2252
Query 60 AACAAACAACAACGACAATTTGCAAGTATGAAGAGATAAGAGTAACAAGGCAATCAACAA 119
||||| |||| | |||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 2253 AACAA-CAAC-A--ACAACTTGAAAGTATGAAGAGATAAGAGTAACAAGACAATCAACAA 2308
Query 120 GAAACACAAGTTGAGATTTCTGTGCCTCCCTCTGTGGAATAAGGAGAGACACACATCTTC 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2309 GAAACACAAGTTGAGATTTCTGTGCCTCTCTCTGTGGAATAAGGAGAGACACACATCTTC 2368
Query 180 TTACCCTTTTAAAAGAGAAAATATATAGTATAATTTCAATTTCAAAACTC-TT-TA-TAT 236
||||||||||||||||| ||| |||||||||||||||||||| |||||| || || |||
Sbjct 2369 TTACCCTTTTAAAAGAGGAAA-ATATAGTATAATTTCAATTT-GAAACTCTTTATATTAT 2426
Query 237 CTATCT-AC-ATTCACACTTCACCTAACCCAACATCTC-----------ATCTCTCTTCT 283
|||||| | | ||||||||||||||||||||||||| |||||||||||
Sbjct 2427 CTATCTCTCTACACACACTTCACCTAACCCAACATCTCTTCCTTTTTTTATCTCTCTTCT 2486
Query 284 TCTCCCTAACTAAAATGGCAAGTTGGGTTCTATCAGAATGTGGTTTAAGACCACTACCAA 343
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2487 TCTCCCTAACTAAAATGGCAAGTTGGGTTCTATCAGAATGTGGTCTAAGACCACTACCAA 2546
Query 344 AAATATACCCAAAGCCTACAATAGGTTTTTCTTCTTCCGTTTCTGTTTCCGCCACCAGTT 403
|||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 2547 AAATATACCCAAAGCCTACAATTGGTTTTTCTTCTTCCGTTTCTGTTTCCGCAACAAGTT 2606
Query 404 TGAATTTGAGAAGAATTTCACCTTCACCTATACGAACAGATCGGAATTGTTGGGCATTGA 463
| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2607 TAAATCTGAGAAGGATTTCACCTTCACCTATACGAACAGATCGGAATTGTTGGGCATTGA 2666
Query 464 GGGTAAGTGCACCGCTTAGGATCCAAATTGCCGGAGAAGAA---GAGGAACAAACAACAA 520
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 2667 GGGTAAGTGCACCGCTTAGGATCCAAATTGCCGGAGAAGAAGAGGAGGAAAAAACAACAA 2726
Query 521 ACAATGGGGATGAGTTTTTTGACCCAGGGGCACCACCCCCTTTTAAGCTTTCTGATATTA 580
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2727 ACAATGGGGTTGAGTTTTTTGACCCAGGAGCACCACCCCCTTTTAAGCTTTCTGATATTA 2786
Query 581 AGGCAGCTATTCCTAAGCATTGTTGGGTCAAAAATCCATGGACGTCCATGAGTTATGTTG 640
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2787 AGGCAGCTATTCCTAAGCATTGTTGGGTCAAAAATCCATGGACATCCATGAGTTATGTTG 2846
Query 641 TTAGAGATGTAGCTATTGTGTTTGGGCTGGCGGCTGCTGCTGCTTATTTCAACAATTGGC 700
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2847 TTAGAGATGTAGCTGTTGTGTTTGGGCTGGCGGCGGCTGCTGCTTATTTCAACAATTGGC 2906
Query 701 TTGTTTGGCCTCTTTATTGGTTTGCTCAGAGTACAATGTTTTGGGCTCTCTTTGTTCTAG 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2907 TTGTTTGGCCTCTTTATTGGTTTGCTCAGAGTACAATGTTTTGGGCTCTCTTTGTTCTAG 2966
Query 761 GTCATGATTGTGGACATGGAAGCTTTTCAAATAACCATAGCTTGAATAGCGTTGCTGGAC 820
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2967 GTCATGATTGTGGACATGGAAGCTTTTCGAATAACCATAGCTTGAATAGCGTTGCTGGAC 3026
Query 821 ATATTCTTCATTCTTCGATTCTTGTTCCTTATCATGGATGG 861
|||||||||||||||| ||||||||||||||||||||||||
Sbjct 3027 ATATTCTTCATTCTTCAATTCTTGTTCCTTATCATGGATGG 3067
Score = 348 bits (188), Expect = 2e-93
Identities = 188/188 (100%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 1020 GTGGGGTAGAAGTCCGGGAAAGAAAGGTTCTCACTTTGATCCAAACAGTGATTTGTTTGT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3466 GTGGGGTAGAAGTCCGGGAAAGAAAGGTTCTCACTTTGATCCAAACAGTGATTTGTTTGT 3525
Query 1080 GGCAAGTGAGAAGAAAGATGTGATCACTTCAACTGTCTGCTGGACGGCAATGGCTGCATT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3526 GGCAAGTGAGAAGAAAGATGTGATCACTTCAACTGTCTGCTGGACGGCAATGGCTGCATT 3585
Query 1140 GCTTGTAGGATTGTCCTTTGTCATGGGTCCTCTTCAAATGCTTAAGCTTTATGGCATCCC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3586 GCTTGTAGGATTGTCCTTTGTCATGGGTCCTCTTCAAATGCTTAAGCTTTATGGCATCCC 3645
Query 1200 CTATTGGG 1207
||||||||
Sbjct 3646 CTATTGGG 3653
Score = 172 bits (93), Expect = 2e-40
Identities = 93/93 (100%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 928 TTATCTGAGAAGCTTTACAATAGTTTGGATGATATCACAAAGAAATTTAGGTTCACTCTA 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3293 TTATCTGAGAAGCTTTACAATAGTTTGGATGATATCACAAAGAAATTTAGGTTCACTCTA 3352
Query 988 CCCTTTCCCTTGCTGGCATATCCTTTCTATCTG 1020
|||||||||||||||||||||||||||||||||
Sbjct 3353 CCCTTTCCCTTGCTGGCATATCCTTTCTATCTG 3385
Score = 126 bits (68), Expect = 1e-26
Identities = 68/68 (100%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 860 GGAGAATAAGCCACAGAACTCATCATCAGAACCATGGACATGTTGAGAATGATGAATCAT 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3141 GGAGAATAAGCCACAGAACTCATCATCAGAACCATGGACATGTTGAGAATGATGAATCAT 3200
Query 920 GGCATCCT 927
||||||||
Sbjct 3201 GGCATCCT 3208
>scaffold20955
Length=24545
Score = 671 bits (363), Expect = 0.0
Identities = 402/418 (96%), Gaps = 14/418 (3%)
Strand=Plus/Plus
Query 1423 GCA-ACTGAAGCTGCTAAACCAGTGTTAGGGAAATATTATAAGGAGCCAAAGAAGTCAGG 1481
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCAGACTGAAGCTGCTAAACCAGTGTTAGGGAAATATTATAAGGAGCCAAAGAAGTCAGG 720
Query 1482 GCCTCTACCATTTTACTTGTTGGGATATCTGATAAGAAGCATGAAGGAGGATCACTTTGT 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCCTCTACCATTTTACTTGTTGGGATATCTGATAAGAAGCATGAAGGAGGATCACTTTGT 780
Query 1542 GAGTGACACAGGGAATGTAGTATATTATGAAACTGATCCCAACCTTTATGGGTCTAAGAA 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAGTGACACAGGGAATGTAGTATATTATGAAACTGATCCCAACCTTTATGGGTCTAAGAA 840
Query 1602 ATAGCAAAACCCTGTTAGCTGATTATTTTTTCACTAACACTATCTATGGCCATTCAAGTT 1661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATAGCAAAACCCTGTTAGCTGATTATTTTTTCACTAACACTATCTATGGCCATTCAAGTT 900
Query 1662 GGTT---------ACTACTAGTTGAGCACAGAGTAAAGTTAGAAGATGGGGGAAGGCATA 1712
|||| ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 901 GGTTGTATTAAGCACTACTAGTTGAGCACAGA-TAAAGTTAGAAGATT-GGGAAGGCATA 958
Query 1713 TAGTTTCAATTATTGTCTTCAGGACCTTTTGTTGGGTTGGCCA-AGAAAGTATATTATTT 1771
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 959 TAGTTTCAATTATTGTCTTCAGGACCTTCTGTTGGGTTGGCCATAGAAAGTATATTATTT 1018
Query 1772 GTATTCTGGATTCTGAAATGTTTTATTTAT-AAAAAATATACTTCAGTTCCCACCATC 1828
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1019 GTATTCTGGATTCTGAAATGTTTTATTTATAAAAAAATATACTTCAGTTCCCACCATC 1076
Score = 259 bits (140), Expect = 1e-66
Identities = 140/140 (100%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 1286 AGGAATGGAGTTATCTGAGAGGAGGGCTTACAACACTTGATCGTGACTATGGATGGATTA 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 AGGAATGGAGTTATCTGAGAGGAGGGCTTACAACACTTGATCGTGACTATGGATGGATTA 506
Query 1346 ACAACATCCACCATGACATAGGGACTCATGTGATACATCATCTCTTCCCTCAAATCCCAC 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 ACAACATCCACCATGACATAGGGACTCATGTGATACATCATCTCTTCCCTCAAATCCCAC 566
Query 1406 ACTATCATTTGGTAGAAGCA 1425
||||||||||||||||||||
Sbjct 567 ACTATCATTTGGTAGAAGCA 586
Score = 220 bits (119), Expect = 5e-55
Identities = 119/119 (100%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 1089 GAAGAAAGATGTGATCACTTCAACTGTCTGCTGGACGGCAATGGCTGCATTGCTTGTAGG 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAGAAAGATGTGATCACTTCAACTGTCTGCTGGACGGCAATGGCTGCATTGCTTGTAGG 60
Query 1149 ATTGTCCTTTGTCATGGGTCCTCTTCAAATGCTTAAGCTTTATGGCATCCCCTATTGGG 1207
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTGTCCTTTGTCATGGGTCCTCTTCAAATGCTTAAGCTTTATGGCATCCCCTATTGGG 119
Score = 154 bits (83), Expect = 5e-35
Identities = 83/83 (100%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 1206 GGGCTTTGTCATATGGCTGGATTTAGTTACCTATTTGCATCACCATGGCCATGAAGATAA 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GGGCTTTGTCATATGGCTGGATTTAGTTACCTATTTGCATCACCATGGCCATGAAGATAA 255
Query 1266 AGTTCCTTGGTACAGAGGAGAGG 1288
|||||||||||||||||||||||
Sbjct 256 AGTTCCTTGGTACAGAGGAGAGG 278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 1638772030962
Database: /home/jforment/biovice/data/Solanum_chilense/Stam_et_al_2019/Solanum
_chilense.scaffolds.fa
Posted date: Feb 4, 2020 11:55 AM
Number of letters in database: 913,880,739
Number of sequences in database: 81,304
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5