FastQCFastQC Report
Wed 18 May 2022
S38_SantoTomePrincipe.sRNAs.15-35nt.Partitivirus_1_segment_2.forward-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS38_SantoTomePrincipe.sRNAs.15-35nt.Partitivirus_1_segment_2.forward-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18
Sequences flagged as poor quality0
Sequence length17-31
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGAGCCAGGTAAGATTTCCG211.11111111111111No Hit
TCATTAAAGAACGGACCAGTT211.11111111111111No Hit
TAGCGGAAACAGTGATTGCCATTC211.11111111111111No Hit
TCGAGAAAACGACGGGC15.555555555555555No Hit
TAGCAGGAATGAGCGGTACACG15.555555555555555No Hit
TCCAATCAAAGCCCAGGTCGTCA15.555555555555555No Hit
TTCTCAGTGATGACGACGGCT15.555555555555555No Hit
TTCTCAGTGATGACGACGGCTGCAC15.555555555555555No Hit
TAGAGGACGGGTGAAAAGAATTCAGGAACCA15.555555555555555No Hit
TTTCGTTGGGTCTCAAGGTTAAT15.555555555555555No Hit
TAACGGTTGCAGCAGTTGAGAGA15.555555555555555No Hit
TTGGAATAGCCGTGAGAGGACA15.555555555555555No Hit
TGCCAGAAGCGTTCAGTGCTG15.555555555555555No Hit
CAATCGGGTTAGAACATCAGT15.555555555555555No Hit
TAAAAAAACGGACAATCCCCA15.555555555555555No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)