FastQCFastQC Report
Wed 18 May 2022
S38_SantoTomePrincipe.sRNAs.15-35nt.Partitivirus_3_segment_2.reverse-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS38_SantoTomePrincipe.sRNAs.15-35nt.Partitivirus_3_segment_2.reverse-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length15-23
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGGTTTGGGTTGATGGGCC222.22222222222222No Hit
ACGGGTGTGCGGGTTTGCTG111.11111111111111No Hit
CGACCGCGATCCTGTTTGGAG111.11111111111111No Hit
ATGGCTCATTGAGCGCCCGGC111.11111111111111No Hit
ACAAGATCGGTTGGT111.11111111111111No Hit
TCATTGAGCGCCCGGCTGAACAG111.11111111111111No Hit
AGGATCCGTCTGGAT111.11111111111111No Hit
CAAATTGTACTGGGCT111.11111111111111No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)