FastQCFastQC Report
Wed 21 Oct 2020
S33.virusContigs-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS33.virusContigs-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1957
Sequences flagged as poor quality0
Sequence length15-30
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGGCTCGGTACTGACTCGACAAGCGCC1246.336228921819111No Hit
TTAACGGCGCTGTTGGGTGGTCCCGAAGCC1115.6719468574348495No Hit
TGAACCGGAACCACAGAACTCAGAGTCACT552.810424118548799No Hit
TTGGGCTCGGTACTGACTCGACAAGCGCCT391.992846193152785No Hit
TATACGTCGTGTATGATGCGAGGCCTTGG371.890648952478283No Hit
TTAACGACCCGCTCTGTTCCATATCGATA341.7373530914665303No Hit
TCAAAGAAAAGCTTACTCGGCCTGTGCATC331.6862544711292795No Hit
TAACGGCGCTGTTGGGTGGTCCCGAAGCC331.6862544711292795No Hit
TTTGTTAACTGGCCGACTTCCCCCGCCT301.532958610117527No Hit
TATTGTCGAATAACCCACCTCTTGG281.430761369443025No Hit
TAACGACCCGCTCTGTTCCATATCGATAT251.2774655084312723No Hit
TTCTAGATCTGCCGAGAACTTTCCCTTACC231.1752682677567705No Hit
TCTGAACCGGAACCACAGAACTCAGAGTC190.9708737864077669No Hit
TCGGTACTGACTCGACAAGCGCCTCGTAC190.9708737864077669No Hit
TACCCAATCGCCATGTACGCCCTCCGACT180.9197751660705161No Hit
TTAACGGCGCTGTTGGGTGGTCCCGAAG180.9197751660705161No Hit
TTAACGACCCGCTCTGTTCCATATCGATAT170.8686765457332651No Hit
TATACGTCGTGTACGACGCGAGACCGCGGA170.8686765457332651No Hit
TGGGCTCGGTACTGACTCGACAAGCGCCT170.8686765457332651No Hit
TAAAAGGACCGATTCGGGCAGTGAGTGTC160.8175779253960144No Hit
TTAGATGGACCCGGTATAGGATTTTCGCTC160.8175779253960144No Hit
TACGGCGGTAACAATGTCCCAGAGGCTGC150.7664793050587635No Hit
TGAATTGCCGTGGCTCGGAAGTTGGGCTC140.7153806847215125No Hit
TAACACAAGCCCGATCGCTCCGATACATG140.7153806847215125No Hit
TGAGAAAAAGTCACCGTCGTCCTCATGAC130.6642820643842616No Hit
TGGGCTCGGTACTGACTCGACAAGCGCC130.6642820643842616No Hit
TGTTCCAGGCTCCCCACTCGTCTTCTGTG120.6131834440470108No Hit
TCGGTACTGACTCGACAAGCGCCTCGTACT120.6131834440470108No Hit
TCTAGATCTGCCGAGAACTTTCCCTTACC110.5620848237097598No Hit
AAAAGTCACCGTCGTCCTCATGACTGCCT100.5109862033725089No Hit
TCGTCTGAACCGGAACCACAGAACTCAG100.5109862033725089No Hit
TTCTTGTTCGGAAAAGTCGCTGGCTTCGT100.5109862033725089No Hit
AGATACGAAACTGCATCGTGGCACTCC100.5109862033725089No Hit
TACCCTATTATCTCGTCTGTCCCCAAAGT90.45988758303525806No Hit
ACCGGAACCACAGAACTCAGAGTCACTGTT90.45988758303525806No Hit
TTTGTAGAATGGAAGTTAGCGGCGCTGTT90.45988758303525806No Hit
TTAACGGCGCTGTTGGGTGGTCCCGAAGC80.4087889626980072No Hit
TACAATTTCTGCATCGTTATAGCACTGAT80.4087889626980072No Hit
TTTTCAACAAGGTTCTTGGTTGGTTGGG80.4087889626980072No Hit
TGTTTGAGGACTCCACGCTGAAATGCCCT80.4087889626980072No Hit
TCTTATAATACGCCAGCGAAGGATCGTTCC80.4087889626980072No Hit
TATTGTCGAATAACCCACCTCTTGGTG70.35769034236075625No Hit
TCAAAAAAGAAGTTCTTTCCCGCGTTGGA70.35769034236075625No Hit
TCGGCAACTTTTTCAGAGCGCGTGCGAAA70.35769034236075625No Hit
TACCTGTCCACTGCTGTACGAAGGCCTCT70.35769034236075625No Hit
TTTGACTACCCAATCGCCATGTACGCCCTC70.35769034236075625No Hit
TACTGACTCGACAAGCGCCTCGTACTTGT70.35769034236075625No Hit
TCATCTTCTTGTTCGGAAAAGTCGCTGGCT70.35769034236075625No Hit
TTGTAGAATGGAAGTTAGCGGCGCTGTT60.3065917220235054No Hit
TACTTGGATTTGTGGGATGATGGCATCGC60.3065917220235054No Hit
TAGGCCAGGAAATTGTTCATCGTCTGAACC60.3065917220235054No Hit
TACGCCCTCCGACTTGAAGGTACACAGCCT60.3065917220235054No Hit
TCAAAACTCCCTCTTCGAACGTAACACAAG60.3065917220235054No Hit
TTGTCGCATTAAGAAAAGATTCCCTACCC60.3065917220235054No Hit
TAACGACCCGCTCTGTTCCATATCGATA60.3065917220235054No Hit
TCCCTTACCATACTTCCACGACAAACAGCT60.3065917220235054No Hit
TATACGTCGTGTATGATGCGAGGCCTTGGA60.3065917220235054No Hit
TGTTCCAGGCTCCCCACTCGTCTTCTGTGT60.3065917220235054No Hit
TAACGGCGCTGTTGGGTGGTCCCGAAG60.3065917220235054No Hit
TTCTAGATCTGCCGAGAACTTTCCCTTAC60.3065917220235054No Hit
TCGTCTGAACCGGAACCACAGAACTCAGA60.3065917220235054No Hit
TTATACAACCTCCCCACCAATAGCCAACAT50.25549310168625444No Hit
TTTTTCAACAAGGTTCTTGGTTGGTTGGG50.25549310168625444No Hit
TCCCAGAGGCTGCTCCGACAAACATTACAT50.25549310168625444No Hit
TCAGGGGTCGGCAACTTTTTCAGAGCGC50.25549310168625444No Hit
CACTTCAACTACCTCGCCAACTGTTATCGC50.25549310168625444No Hit
TGCCGAAGCCATAAAAGGACCGATTCGGGC50.25549310168625444No Hit
TGAGGACTCCACGCTGAAATGCCCTGACCC50.25549310168625444No Hit
TAGATGGACCCGGTATAGGATTTTCGCTC50.25549310168625444No Hit
TATTGTCGAATAACCCACCTCTTGGT50.25549310168625444No Hit
TCAGAGTCACTGTTTGCTGAGGCAATCTT50.25549310168625444No Hit
TGAGGACTCCACGCTGAAATGCCCTGACC50.25549310168625444No Hit
CACGACGCATTTTCGTAGTTCTCCCCAAGC50.25549310168625444No Hit
GAGGACTCCACGCTGAAATGCCCTGACCCG40.2043944813490036No Hit
TAGGCACAATCGTGGACGACGTGGAGGT40.2043944813490036No Hit
AACCACAGAACTCAGAGTCACTGTTTGCTG40.2043944813490036No Hit
TGTTAACAAGTGTTCCAGGCTCCCCACTC40.2043944813490036No Hit
TAGACGTTAACGGCGCTGAGGGGTGTTG40.2043944813490036No Hit
CGCGAGACCGCGGAGGCACTCTTTGAAGG40.2043944813490036No Hit
TAAAAGGATCTGTTCGGGTAATGAGTGTC40.2043944813490036No Hit
TATTCACTGGCTTCCGCTTCAAAACTCCT40.2043944813490036No Hit
TTACCTAAATTTCCTCTACCATTCCTCGG40.2043944813490036No Hit
TCCCAAACTTCGACTCGGACCAGTGCCGG40.2043944813490036No Hit
AGATACGAAACTGCATCGTGGCACTC40.2043944813490036No Hit
TCCTGGCCTATCTGTTTCGTGTGGACGC40.2043944813490036No Hit
TACGCCAGCGAAGGATCGTTCCCTAAACTC40.2043944813490036No Hit
TGAATTGCCGTGGCTCGGAAGTTGGGCTCT40.2043944813490036No Hit
TTTTCAACAAGGTTCTTGGTTGGTTGGGA40.2043944813490036No Hit
TGATTGTCGTCGTCGTGGTCAGCCGTTA40.2043944813490036No Hit
CCGGTTCAGACGATGAACAATTTCCTGGC40.2043944813490036No Hit
TTAGATGGACCCGGTATAGGATTTTCGCT40.2043944813490036No Hit
TGTTGTATCGACACCCGGCTGGGCCTCTC40.2043944813490036No Hit
TTCCAACGTCTCGTTCCATCGGATC40.2043944813490036No Hit
TCCACGCTGAAATGCCCTGACCCGCCT40.2043944813490036No Hit
GAACCGGAACCACAGAACTCAGAGTCACT40.2043944813490036No Hit
TTGGGCTCGGTACTGACTCGACAAGCGCCC40.2043944813490036No Hit
TCGGTTATTACTCTAAATGCCCCGCAAAAC40.2043944813490036No Hit
TCACTGGCTTCCGCTTCAAAACTCCTCTC40.2043944813490036No Hit
TAGGGAATTTTTGAATGGCTGCTATTTT40.2043944813490036No Hit
AGATACGAAACTGCATCGTGGCACTCCT40.2043944813490036No Hit
TGCGCCGAACCCGTTACATAGTTAGATCTC40.2043944813490036No Hit
TGCAGAAATACCGCTGGCAGAAGCTCCACT40.2043944813490036No Hit
TATTTTTTTTGGGCGGATTCTTTCGGGG40.2043944813490036No Hit
TAGGCCAGGAAATTGTTCATCGTCTGAAC40.2043944813490036No Hit
TCCGAATCGATATTGTCGAATAACCCACCT40.2043944813490036No Hit
TCTTTTGTTAACTGGCCGACTTCCCCCGCC30.1532958610117527No Hit
TAGAATACAGCACCAGCACCAGCAGATGA30.1532958610117527No Hit
TGAACCGGAACCACAGAACTCAGAGTCAC30.1532958610117527No Hit
TACGTCGTGTATGATGCGAGGCCTTGG30.1532958610117527No Hit
TACGTCGTGTATGATGCGAGGCCTTGGA30.1532958610117527No Hit
TTTACGGTAGTAGCCTAGTAATCCGAGAAA30.1532958610117527No Hit
TGAGGACCAGGGGCTGTGTGAGGGCCTAA30.1532958610117527No Hit
TACCCAATCGCCATGTACGCCCTCCGACTT30.1532958610117527No Hit
TACTGACTCGACAAGCGCCTCGTACT30.1532958610117527No Hit
TTCCCTACCCGGATGTATCTGTTTATCGAC30.1532958610117527No Hit
TACCTACCAAGCCGAAGTTACAATAAAAAT30.1532958610117527No Hit
TCGGCAACTTTTTCAGAGCGCGTGCGAAAA30.1532958610117527No Hit
TCTTTTGTTAACTGGCCGACTTCCCCCGC30.1532958610117527No Hit
TACATATACCCTATTATCTCGTCTGTCCCC30.1532958610117527No Hit
TTCCACGAGTGCCACATAATCCCTAAGGG30.1532958610117527No Hit
TTATCTCGTCTGTCCCCAAAGTACATAATT30.1532958610117527No Hit
TAAGTTCGGTACGACTTTCGGAAGAGGT30.1532958610117527No Hit
TACACGTGCCTCGCGATAACAGTTGGCG30.1532958610117527No Hit
TGATGGCAGGAGATTGAACGTTTGTTTCG30.1532958610117527No Hit
TATAGAATACAGCACCAGCAGCAGCAGAT30.1532958610117527No Hit
TTTGTTAACTGGCCGACTTCCCCCGCCTGA30.1532958610117527No Hit
TTGAATTGCCGTGGCTCGGAAGTTGGGCTC30.1532958610117527No Hit
AAAAAGCACAGGATAGAACTCAATGGAGAG30.1532958610117527No Hit
TCGAGAAATTGGGACACTGTAATATTGGGT30.1532958610117527No Hit
TTAGAGAGAGGACCCAACAACATTGTCGC30.1532958610117527No Hit
TTGGGGATCCCGTAAGAAATACACGTCGTG30.1532958610117527No Hit
TAATGAGTGTCTTTTCTGAGTGGTCCCACC30.1532958610117527No Hit
TAACGACCCGCTCTGTTCCATATCGATATT30.1532958610117527No Hit
GACGCCTCGACAAACAGTGGAGCTTCTGCC30.1532958610117527No Hit
TTTGTCCGGAGGCATCTATTTTTTTGGGA30.1532958610117527No Hit
TACGTCGTGTATGATGCGAGGCCTTGGAG30.1532958610117527No Hit
TCATCTTCTCCACCTAGTCCCTCAAATCT30.1532958610117527No Hit
TTCCCTTACCATACTTCCACGACAAACAGC30.1532958610117527No Hit
CAGGCTCCCCACTCGTCTTCTGTGT30.1532958610117527No Hit
ATCTAGAACACCAGGTCACCCCGAGC30.1532958610117527No Hit
TAACAGGAGTACGGCCCACAGTAGCGTC30.1532958610117527No Hit
ACCGGAACCACAGAACTCAGAGTCACTGT30.1532958610117527No Hit
TCCTTCTTGTTCTTCGTGGCGGCAGCCGA30.1532958610117527No Hit
TTGAGGACTCCACGCTGAAATGCCCTGACC30.1532958610117527No Hit
TATACCCTATTATCTCGTCTGTCCCCAAAG30.1532958610117527No Hit
TTGTTAACTGGCCGACTTCCCCCGCCT30.1532958610117527No Hit
TTCTACTTGGATTTGTGGGATGATGGCATC30.1532958610117527No Hit
TTCTGCTGCTAAGTCTGCTCGTACTGAAGG30.1532958610117527No Hit
TCGGAAAAGTCGCTGGCTTCGTATTCACT30.1532958610117527No Hit
TCGGTAGTTAATTCGAAGGGTTTCGAGAA30.1532958610117527No Hit
TACTGGAAGTGCGGAGAACTTTAGTCCCA30.1532958610117527No Hit
TATAGAATACAGCACCAGCAGCAGCAGATG20.1021972406745018No Hit
TGCAATATAGACGTTAACGGCGCTGAGGG20.1021972406745018No Hit
TCGATTAACGAACTCCACACTTCTTTGGG20.1021972406745018No Hit
TCCACGATTGCGCCTACACAAGCTCCAC20.1021972406745018No Hit
TGCACAGACGCGGTGTTTAGTCTCTGAAA20.1021972406745018No Hit
TTTGTTAACTGGCCGACTTCCCCCGCC20.1021972406745018No Hit
TTGGGCGGATTCTTTCGGGGGTGACAATA20.1021972406745018No Hit
TTTGTTGTAACATTTTTTGTATTTGATTGT20.1021972406745018No Hit
TCCCTAATGAACGGAGCCAGCTGCATCTC20.1021972406745018No Hit
TTCCCTTACCATACTTCCACGACAAACAG20.1021972406745018No Hit
TCTTGCTTTCGACGCGCTAGAGTGGCTGC20.1021972406745018No Hit
CCTCGACAAACAGTGGAGCTTCTGCCAGC20.1021972406745018No Hit
GCGCCGCTAACTTCCATTCTACAAACTC20.1021972406745018No Hit
TTGATTGTCGTCGTCGTGGTCAGCCGTT20.1021972406745018No Hit
TACCTGTTGAAATTACCTACCAAGCCGAAG20.1021972406745018No Hit
TCGTACTGAAGGAACTGGGGAAACTGTG20.1021972406745018No Hit
TAAAAGGACCGATTCGGGCAGTGAGTGTCT20.1021972406745018No Hit
TCGGCTAAGTCTACACCACCATATTTGTA20.1021972406745018No Hit
TGCCTCCTGCCACCAATCCTTCTTGTTTT20.1021972406745018No Hit
TACCCGGATGTATCTGTTTATCGACTAAGT20.1021972406745018No Hit
TACTTCCACGACAAACAGCTGACCGCTCTT20.1021972406745018No Hit
TGCCACGACGCATTTTCGTAGTTCTCCCC20.1021972406745018No Hit
TATAGAATACAGCACCAGCACCAGCAGAT20.1021972406745018No Hit
TATAGACGTTAACGGCGCTGAGGGGTGTT20.1021972406745018No Hit
TCACACACACTACTGATACTATCGGTCTCA20.1021972406745018No Hit
TATCGACACCCGGCTGGGCCTCTCTCAGT20.1021972406745018No Hit
TCATGACTGCCTCCTGCCACCAATCCTTC20.1021972406745018No Hit
TTAGATGGACCCGGTATAGGATTTTCGGTC20.1021972406745018No Hit
TGACCGCTCTTATCAACTTCTCCGAATACC20.1021972406745018No Hit
TCTTGCCACCAGTCCTTCTTGTTCTTCGT20.1021972406745018No Hit
TTAACGACCCGCTCTGTTCCATATCGAT20.1021972406745018No Hit
TGCGGCTCATTCCAAAGAAGAATTCTTTT20.1021972406745018No Hit
TATCGCCTATTGTTTTTTCGTTTAGTTTC20.1021972406745018No Hit
TTTGACTACCCAATCGCCATGTACGCCC20.1021972406745018No Hit
TGAACGGAGCCAGCTGCATCTCACCCTCTT20.1021972406745018No Hit
TTATAATACGCCAGCGAAGGATCGTTCCC20.1021972406745018No Hit
TTCAACGTTTCTAAGGCCGTCGGTTCAGCT20.1021972406745018No Hit
TCTTCATTTCCTCTCCATTGAGTTCTATCC20.1021972406745018No Hit
TGTTTGAGGACTCCACGCTGAAATGCCC20.1021972406745018No Hit
TTCTACAAATCCTACGGAATCAAGCTCAAC20.1021972406745018No Hit
TTTTCCGATCCTCTTTTTATACAACCTCCC20.1021972406745018No Hit
AAGCACAGGATAGAACTCAATGGAAGT20.1021972406745018No Hit
TCGTACTTGTCGATTAACGAACTCCACACT20.1021972406745018No Hit
TACGCCCTCCGACTTGAAGGTATACAGCCT20.1021972406745018No Hit
TTAATTCGAAGGGTTTCGAGAAATTGGGAC20.1021972406745018No Hit
TCATAACTCTTTCTAGCCATGTCCGCATA20.1021972406745018No Hit
TCCCTCTTCGAACGTAACACAAGCCCGATC20.1021972406745018No Hit
TAACACAAGCCCGATCGCTCCGATACATGG20.1021972406745018No Hit
TGTTTGATCCCCACCAAGTAACGTTTTCA20.1021972406745018No Hit
ATGGAGAGGAAATGAAGAGGCCTTGGTC20.1021972406745018No Hit
GGATGAAGACGCAGCGGCATGTTGAACTG20.1021972406745018No Hit
TGAGAAAAAGTCACCGTCGTCCTCATGA20.1021972406745018No Hit
TTACCTAAATTTCCTCTACCATTCCTGGG20.1021972406745018No Hit
TCACTGGCTTCCGCTTCAAAACTCCTCT20.1021972406745018No Hit
TCGATATTGTCGAATAACCCACCTCTTGG20.1021972406745018No Hit
TTAGAGTTTCAAATGCTGTTGGTTCTGCT20.1021972406745018No Hit
TCCCGTTGTTAACAAGTGTTCCAGGCTCCC20.1021972406745018No Hit
TGAGTGTCTTTTCTGAGTGGTCCCACCTC20.1021972406745018No Hit
TTAACGACCCGCTCTGTTCCATATCGATAA20.1021972406745018No Hit
TCCTTAATGTGAAGTGAAGACCATACCCTG20.1021972406745018No Hit
TTCGGTGTCCACACGAGAAACAGAAACGC20.1021972406745018No Hit
TCACCGTCGTCCTCATGACTGCCTCCTGC20.1021972406745018No Hit
TGTTGTATCGACACCCGGCTGGGCCTCTCC20.1021972406745018No Hit
TCGTGGATGACGTGGACGTGGTCGTTGTG20.1021972406745018No Hit
TTGAAAAATATGTTTCCCGGATATTGCCC20.1021972406745018No Hit
TTGTTCGGAAAAGTCGCTGGCTTCGTATT20.1021972406745018No Hit
TACATAAGAAGCGCAATGGTTCCACCTAGG20.1021972406745018No Hit
TTGGTATGATCACCTCTGAGTATGGGGCT20.1021972406745018No Hit
TGGGTCGAGTACGGAGGGCGTCTTGTATGC20.1021972406745018No Hit
TAAGAAAAGATTCCCTACCCGGATGTATC20.1021972406745018No Hit
TCCCTACCCGGATGTATCTGTTTATCGACT20.1021972406745018No Hit
CTTGTTCGGAAAAGTCGCTGGCTTCGTATT20.1021972406745018No Hit
TTTACCTAAATTTCCTCTACCATTCCTCGG20.1021972406745018No Hit
TGGCTTCCGCTTCAAAACTCCTCTCGAT20.1021972406745018No Hit
TCCTGGCCTATCTGTTTCGTGTGGACGCC20.1021972406745018No Hit
ACAGATACGAAACTGCATCGTGGCACTC20.1021972406745018No Hit
TGAAGACCATACCCTGTACCAAAAGAATA20.1021972406745018No Hit
TTTTGTTAACTGGCCGACTTCCCCCGCCT20.1021972406745018No Hit
AACATGGTCTCTATTCTCAGCTGCAAGGG20.1021972406745018No Hit
TATTAATGAGACCGCGGAGGACTATCTC20.1021972406745018No Hit
TTCGACTGTTAGGTGGGCAAAATTTGGGA20.1021972406745018No Hit
TCAAACACTACTCCGTTGAACCATCCGACC20.1021972406745018No Hit
TCCATTACCCTATCCGGATGCTTGCAGCCT20.1021972406745018No Hit
TTCAAATGCTGTTGGTTCTGCTTGCGGCTC20.1021972406745018No Hit
TTCTAACAAACTGACGGACACAAACCCTG20.1021972406745018No Hit
TCTTTTCTGAGTGGTCCCACCTCCCCCGCC20.1021972406745018No Hit
TCCTCATGACTGCCTCCTGCCACCAATCC20.1021972406745018No Hit
TATCCGGATGCTTGCAGCCTCTTTTAACA20.1021972406745018No Hit
TAGAATGGGCGGATTCTGTCATTGACA20.1021972406745018No Hit
TTCCCTAAACTCGCGTTCATTTCTGCCCT20.1021972406745018No Hit
TTACGGTAGTAGCCTAGTAATCCGAGAAAT20.1021972406745018No Hit
TCTTGCTTTCGACGCGCTAGAGTGGCTG20.1021972406745018No Hit
TCGGATCCTATTGCATATGCGGATGCATC20.1021972406745018No Hit
TATGCCTGCCATGGCCGATCTTTTTCTTCT20.1021972406745018No Hit
TTATTAATGAGACCGCGGAGGACTATCTC20.1021972406745018No Hit
TCCTGGCCTATCTGTTTCGTGTGGACG20.1021972406745018No Hit
TAATGAGTGTCTTTTCTGAGTGGTCCCA20.1021972406745018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)