FastQCFastQC Report
Wed 21 Oct 2020
S34.virusContigs-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS34.virusContigs-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3752
Sequences flagged as poor quality0
Sequence length15-30
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGGCTCGGTACTGACTCGACAAGCGCC1353.5980810234541574No Hit
TTAACGGCGCTGTTGGGTGGTCCCGAAGCC1323.518123667377399No Hit
TATTGTCGAATAACCCACCTCTTGTTGG1273.384861407249467No Hit
TATACGTCGTGTATGATGCGAGGCCTTGG1223.251599147121535No Hit
TTGGGCTCGGTACTGACTCGACAAGCGCCT882.345415778251599No Hit
TGAACCGGAACCACAGAACTCAGAGTCACT782.0788912579957355No Hit
TGTTCCAGGCTCCCCACTCGTCTTCTGTG772.0522388059701493No Hit
TCAAAGAAAAGCTTACTCGGCCTGTGCATC541.439232409381663No Hit
TTAACGGCGCTGTTGGGTGGTCCCGAAG531.4125799573560769No Hit
TATACGTCGTGTATGATGCGAGGCCTTGGA511.359275053304904No Hit
TTAACGACCCGCTCTGTTCCATATCGATA461.2260127931769722No Hit
TATTGTCGAATAACCCACCTCTTGG441.1727078891257996No Hit
TATACGTCGTGTACGACGCGAGACCGCGGA391.0394456289978677No Hit
TAAAAGGACCGATTCGGGCAGTGAGTGTC370.9861407249466951No Hit
TACGGCGGTAACAATGTCCCAGAGGCTGC370.9861407249466951No Hit
TAGGCACAATCGTGGACGACGTGGAGGT330.8795309168443497No Hit
TAACGGCGCTGTTGGGTGGTCCCGAAGCC330.8795309168443497No Hit
TTAACGACCCGCTCTGTTCCATATCGATAT320.8528784648187633No Hit
TTTGTTAACTGGCCGACTTCCCCCGCCT300.7995735607675907No Hit
TACCCAATCGCCATGTACGCCCTCCGACT290.7729211087420043No Hit
TGAATTGCCGTGGCTCGGAAGTTGGGCTC270.7196162046908315No Hit
TCGGTACTGACTCGACAAGCGCCTCGTAC270.7196162046908315No Hit
TCTAGATCTGCCGAGAACTTTCCCTTACC270.7196162046908315No Hit
TCTGAACCGGAACCACAGAACTCAGAGTC270.7196162046908315No Hit
TCGGTACTGACTCGACAAGCGCCTCGTACT260.6929637526652452No Hit
TAACGACCCGCTCTGTTCCATATCGATAT260.6929637526652452No Hit
TGGGCTCGGTACTGACTCGACAAGCGCCT240.6396588486140725No Hit
AGATACGAAACTGCATCGTGGCACTCC200.5330490405117271No Hit
TTCTAGATCTGCCGAGAACTTTCCCTTACC190.5063965884861408No Hit
TACCCTATTATCTCGTCTGTCCCCAAAGT190.5063965884861408No Hit
TGAGAAAAAGTCACCGTCGTCCTCATGAC190.5063965884861408No Hit
AAAAGTCACCGTCGTCCTCATGACTGCCT190.5063965884861408No Hit
TAACGACCCGCTCTGTTCCATATCGATATT190.5063965884861408No Hit
TGTTTGAGGACTCCACGCTGAAATGCCCT180.4797441364605544No Hit
TATTGTCGAATAACCCACCTCTTGGT180.4797441364605544No Hit
TACGTCGTGTATGATGCGAGGCCTTGG180.4797441364605544No Hit
AGATACGAAACTGCATCGTGGCACTC180.4797441364605544No Hit
TCTTATAATACGCCAGCGAAGGATCGTTCC160.42643923240938164No Hit
TTTGTAGAATGGAAGTTAGCGGCGCTGTT150.39978678038379534No Hit
TGTTCCAGGCTCCCCACTCGTCTTCTGTGT150.39978678038379534No Hit
TCCACGCTGAAATGCCCTGACCCGCCT150.39978678038379534No Hit
GAGGACTCCACGCTGAAATGCCCTGACCCG150.39978678038379534No Hit
TGGGCTCGGTACTGACTCGACAAGCGCC150.39978678038379534No Hit
TGCAAGCAGTGAAGCCGCAGCCTTACGGAC150.39978678038379534No Hit
TCGTCTGAACCGGAACCACAGAACTCAG150.39978678038379534No Hit
AGCTTGGGGACAGATACGAAACTGCATC150.39978678038379534No Hit
ACCGGAACCACAGAACTCAGAGTCACTGTT140.3731343283582089No Hit
TAACACAAGCCCGATCGCTCCGATACATG140.3731343283582089No Hit
AGATACGAAACTGCATCGTGGCACTCCT140.3731343283582089No Hit
TGGGGATCCCGTAAGAAATACACGTCGTGT130.3464818763326226No Hit
TTGGGGATCCCGTAAGAAATACACGTCGTG130.3464818763326226No Hit
TTAACGGCGCTGTTGGGTGGTCCCGAAGC120.31982942430703626No Hit
TTAGATGGACCCGGTATAGGATTTTCGCTC120.31982942430703626No Hit
TAGGCCAGGAAATTGTTCATCGTCTGAACC110.2931769722814499No Hit
TCCCTCTTCGAACGTAACACAAGCCCGATC110.2931769722814499No Hit
TTATACAACCTCCCCACCAATAGCCAACAT110.2931769722814499No Hit
TAAGTTCGGTACGACTTTCGGAAGAGGT110.2931769722814499No Hit
TGAACCGGAACCACAGAACTCAGAGTCAC100.26652452025586354No Hit
TCCCTACCCGGATGTATCTGTTTATCGACT100.26652452025586354No Hit
TACGTCGTGTATGATGCGAGGCCTTGGAG100.26652452025586354No Hit
TCAAAAAAGAAGTTCTTTCCCGCGTTGGA100.26652452025586354No Hit
TAACGACCCGCTCTGTTCCATATCGATA100.26652452025586354No Hit
TCCCAAACTTCGACTCGGACCAGTGCCGG100.26652452025586354No Hit
CCGGTTCAGACGATGAACAATTTCCTGGC100.26652452025586354No Hit
TGAACGGAGCCAGCTGCATCTCACCCTCTT90.2398720682302772No Hit
TCCCTAAACTCGCGTTCATTTCTGCCCT90.2398720682302772No Hit
TCGGCAACTTTTTCAGAGCGCGTGCGAAA90.2398720682302772No Hit
TGCCGAAGCCATAAAAGGACCGATTCGGGC90.2398720682302772No Hit
TTCTAGATCTGCCGAGAACTTTCCCTTAC90.2398720682302772No Hit
TTCGACTGTTAGGTGGGCAAAATTTGGGA90.2398720682302772No Hit
TAGGAAATTCGTCGGCCTCACAAGTGTGG90.2398720682302772No Hit
TCGTGTACGACGCGAGACCGCGGAGGCA80.21321961620469082No Hit
TCCTGGCCTATCTGTTTCGTGTGGACGC80.21321961620469082No Hit
TTCTTGTTCGGAAAAGTCGCTGGCTTCGT80.21321961620469082No Hit
TATAGACGTTAACGGCGCTGAGGGGTGT80.21321961620469082No Hit
TCTGCCGAGAACTTTCCCTTACCATACTTC80.21321961620469082No Hit
TGCAGAAATACCGCTGGCAGAAGCTCCACT80.21321961620469082No Hit
AAGGTATTGACGACACGACTGGTTCCGAAT80.21321961620469082No Hit
TGAATTGCCGTGGCTCGGAAGTTGGGCTCG70.18656716417910446No Hit
TCACCGTCGTCCTCATGACTGCCTCCTGCC70.18656716417910446No Hit
TGTCTTTTGTTAACTGGCCGACTTCCCCC70.18656716417910446No Hit
TTCCCTAAACTCGCGTTCATTTCTGCCCT70.18656716417910446No Hit
TGCGCCGAACCCGTTACATAGTTAGATCTC70.18656716417910446No Hit
TTAGATGGACCCGGAATAGGATTTTCGCTC70.18656716417910446No Hit
TTGTAGAATGGAAGTTAGCGGCGCTGTT70.18656716417910446No Hit
TACCTGTCCACTGCTGTACGAAGGCCTCT70.18656716417910446No Hit
TGACTGCCTCCTGCCACCAATCCTTCTTGT60.15991471215351813No Hit
TCCGATACATGGATTGAACTTCCTGAGTGT60.15991471215351813No Hit
TTAGCGGCGCTGTTGGGTGGTCCCGAAG60.15991471215351813No Hit
TTCGAAGGGTTTCGAGAAATTGGGACACT60.15991471215351813No Hit
TTATTAATGAGACCGCGGAGGACTATCTC60.15991471215351813No Hit
TCTTTTGTTAACTGGCCGACTTCCCCCGCC60.15991471215351813No Hit
TTCCCTTACCATACTTCCACGACAAACAG60.15991471215351813No Hit
TTAACGGCGCTGTTGGGTGGTCCCGAA60.15991471215351813No Hit
TACTTGGATTTGTGGGATGATGGCATCGC60.15991471215351813No Hit
TACAATTTCTGCATCGTTATAGCACTGAT60.15991471215351813No Hit
TGTGTCTCAATATCGACAACGTGCACCGGT60.15991471215351813No Hit
TATACGGCGGTAACAATGTCCCAGAGGCT60.15991471215351813No Hit
TCATCTTCTTGTTCGGAAAAGTCGCTGGCT60.15991471215351813No Hit
TGTTGTATCGACACCCGGCTGGGCCTCTC60.15991471215351813No Hit
TACAACTGTGGAACGGGGCGATTGGGA60.15991471215351813No Hit
TAGATGGACCCGGAATAGGATTTTCGCTC60.15991471215351813No Hit
TATTGTCGAATAACCCACCTCTTGGTG50.13326226012793177No Hit
TACGTCGTGTATGATGCGAGGCCTTGGA50.13326226012793177No Hit
TGAGGACCAGGGGCTGTGTGAGGGCCTAA50.13326226012793177No Hit
TACCCTATTATCTCGTCTGTCCCCAAAG50.13326226012793177No Hit
TACGCCCTCCGACTTGAAGGTACACAGCCT50.13326226012793177No Hit
TATTCACTGGCTTCCGCTTCAAAACTCCT50.13326226012793177No Hit
TCTTTTGTTAACTGGCCGACTTCCCCCGC50.13326226012793177No Hit
TTAACGACCCGCTCTGTTCCATATCGAT50.13326226012793177No Hit
TTTGACTACCCAATCGCCATGTACGCCCTC50.13326226012793177No Hit
TGCAATATAGACGTTAACGGCGCTGAGGGG50.13326226012793177No Hit
TGAGAAAAAGTCACCGTCGTCCTCATGACT50.13326226012793177No Hit
TAGGCCAGGAAATTGTTCATCGTCTTTGGC50.13326226012793177No Hit
TCGTCTGAACCGGAACCACAGAACTCAGA50.13326226012793177No Hit
TCGGATCCTATTGCATATGCGGATGCATC50.13326226012793177No Hit
TAAAAGGATCTGTTCGGGTAATGAGTGT50.13326226012793177No Hit
TTGATTGTCGTCGTCGTGGTCAGCCGTT50.13326226012793177No Hit
TTAACGACCCGCTCTGTTCCATATCGA50.13326226012793177No Hit
TTGGGCTCGGTACTGACTCGACAAGCG50.13326226012793177No Hit
TGAGTGTCTTTTGTGAGTGGTCCCACCTC50.13326226012793177No Hit
CTTGGATCGGAAATGTTCATGGGGACGTT50.13326226012793177No Hit
TCAGGGGTCGGCAACTTTTTCAGAGCGC50.13326226012793177No Hit
TATAGAATACAGCACCAGCAGCAGCAGAT50.13326226012793177No Hit
TGATTGTCGTCGTCGTGGTCAGCCATTACC50.13326226012793177No Hit
TACCCTATCCGGATGCTTGCAGCCTCTT50.13326226012793177No Hit
TGGGGATCCCGTAAGAAATACACGTCGTG50.13326226012793177No Hit
TAGTTGCTCCAGAATTGATAGACTGTCCTC50.13326226012793177No Hit
AACACAAGCCCGATCGCTCCGATACATGG50.13326226012793177No Hit
TCCTGAGTGTCCGGAAGATCCTTCTGACG50.13326226012793177No Hit
TTTGAACGTACATAACTTTTCTCCGACCCT50.13326226012793177No Hit
TTGTCGCATTAAGAAAAGATTCCCTACCCG50.13326226012793177No Hit
TCTTCTTGTTCGGAAAAGTCGCTGGCTTCG40.10660980810234541No Hit
TTCGAAGGCCGTCGGTTCAGCTTGTGGT40.10660980810234541No Hit
TAGAATGGAAGTTAGCGGCGCTGTTGGG40.10660980810234541No Hit
CCTCGACAAACAGTGGAGCTTCTGCCAGC40.10660980810234541No Hit
TCGACTGTTAGGTGGGCAAAATTTGGGA40.10660980810234541No Hit
ATTGTCGAATAACCCACCTCTTGTTGG40.10660980810234541No Hit
TAAGGATGCAGCATCCAATGCAACGTGTAA40.10660980810234541No Hit
TCCAGGCTCCCCACTCGTCTTCTGTGTT40.10660980810234541No Hit
TTCCACGAGTGCCACATAATCCCTAAGGG40.10660980810234541No Hit
TTATAATACGCCAGCGAAGGATCGTTCCC40.10660980810234541No Hit
TGAGGACCAGGGGCTGTGTGAGGGCCTA40.10660980810234541No Hit
TGATTGTCGTCGTCGTGGTCAGCCGTTA40.10660980810234541No Hit
TAATACGCCAGCGAAGGATCGTTCCCTAAA40.10660980810234541No Hit
TCCTGGCCTATCTGTTTCGTGTGGACGCC40.10660980810234541No Hit
TTTGACTACCCAATCGCCATGTACGCCCT40.10660980810234541No Hit
TCCATTACCCTATCCGGATGCTTGCAGCCT40.10660980810234541No Hit
TTTCCCTTACCATACTTCCACGACAAACAG40.10660980810234541No Hit
TGTACCTGTTTCCTGAGATGTACTTGCCT40.10660980810234541No Hit
TAGGGAATTTTTGAATGGCTGCTATTTT40.10660980810234541No Hit
TAAATTTTGCGAGGTAGACGTAACGTCGGC40.10660980810234541No Hit
TCTGAGAAAAAGTCACCGTCGTCCTCATG40.10660980810234541No Hit
TCAACGTTTCGAAGGCCGTCGGTTCAGCT40.10660980810234541No Hit
TCCATCAGGGCTTTGTTGTACACTTCGGT40.10660980810234541No Hit
GCAAGCAGTGAAGCCGCAGCCTTACGGAC40.10660980810234541No Hit
TGGCTTCGTATTCACTGGCTTCCGCTTCA40.10660980810234541No Hit
TCAACTTCTCCGAATACCCGTTGGCGTCT40.10660980810234541No Hit
TACAACTGTGGAACGGGGCGATTGGGACG40.10660980810234541No Hit
TTATCTCGTCTGTCCCCAAAGTACATAATT40.10660980810234541No Hit
TACCTAAATTTCCTCTACCATTCCTCGGAC40.10660980810234541No Hit
TTGTTAACAAGTGTTCCAGGCTCCCCACTC40.10660980810234541No Hit
TACTGACTCGACAAGCGCCTCGTACTTGT40.10660980810234541No Hit
ATGGTCTCTATTCTCAGCTGCAAGGGTT40.10660980810234541No Hit
GGATGAAGACGCAGCGGCATGTTGAACTG40.10660980810234541No Hit
GATGTTGGGAAGGGGATACCTATCGCCT40.10660980810234541No Hit
TAGATCTGCCGAGAACTTTCCCTTACCAT40.10660980810234541No Hit
TCACCGTCGTCCTCATGACTGCCTCCTGC40.10660980810234541No Hit
CACAAGCCCGATCGCTCCGATACATGGATT40.10660980810234541No Hit
TGTATCGACACCCGGCTGGGCCTCTCTCAG40.10660980810234541No Hit
TTCGCGAAATCGTCTCCCTTGTAAATTGT40.10660980810234541No Hit
TCAAGGAGGTCCAAATTTCTTTCGGAATG40.10660980810234541No Hit
TCAGAGTCACTGTTTGCTGAGGCAATCTT40.10660980810234541No Hit
TTCTACTTGGATTTGTGGGATGATGGCATC40.10660980810234541No Hit
TCTGAACCGGAACCACAGAACTCAGAGTCA40.10660980810234541No Hit
CAGATCTAGAACACCAGGTCACCCCGAGC40.10660980810234541No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)