FastQCFastQC Report
Mon 30 Nov 2020
S34.raw.2854.reverse-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS34.raw.2854.reverse-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2180
Sequences flagged as poor quality0
Sequence length11-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAACGGCGCTGTTGGGTGGTCCCGAAGCC1326.055045871559633No Hit
TATACGTCGTGTATGATGCGAGGCCTTGG1275.825688073394495No Hit
TGAACCGGAACCACAGAACTCAGAGTCACT803.669724770642202No Hit
TGTTCCAGGCTCCCCACTCGTCTTCTGTG783.577981651376147No Hit
TCACCGTCGTTC773.5321100917431196No Hit
TTAACGGCGCTGTTGGGTGGTCCCGAAG532.431192660550459No Hit
TATACGTCGTGTATGATGCGAGGCCTTGGA522.385321100917431No Hit
TACGGCGGTAACAATGTCCCAGAGGCTGC371.6972477064220184No Hit
TAGGCACAATCGTGGACGACGTGGAGGT361.651376146788991No Hit
TAACGGCGCTGTTGGGTGGTCCCGAAGCC331.5137614678899083No Hit
TACCCAATCGCCATGTACGCCCTCCGACT291.3302752293577982No Hit
TCTGAACCGGAACCACAGAACTCAGAGTC271.2385321100917432No Hit
TCTAGATCTGCCGAGAACTTTCCCTTACC261.1926605504587156No Hit
TTCTAGATCTGCCGAGAACTTTCCCTTACC200.9174311926605505No Hit
TACCCTATTATCTCGTCTGTCCCCAAAGT190.871559633027523No Hit
TACGTCGTGTATGATGCGAGGCCTTGG180.8256880733944955No Hit
TGTTTGAGGACTCCACGCTGAAATGCCCT180.8256880733944955No Hit
TCTTATAATACGCCAGCGAAGGATCGTTCC170.7798165137614679No Hit
TTTGTAGAATGGAAGTTAGCGGCGCTGTT160.7339449541284404No Hit
TCGTCTGAACCGGAACCACAGAACTCAG160.7339449541284404No Hit
TTCACCGTCGTTC150.6880733944954129No Hit
TGTTCCAGGCTCCCCACTCGTCTTCTGTGT150.6880733944954129No Hit
TCCACGCTGAAATGCCCTGACCCGCCT150.6880733944954129No Hit
GAGGACTCCACGCTGAAATGCCCTGACCCG140.6422018348623854No Hit
ACCGGAACCACAGAACTCAGAGTCACTGTT140.6422018348623854No Hit
TTAACGGCGCTGTTGGGTGGTCCCGAAGC120.5504587155963303No Hit
TTATACAACCTCCCCACCAATAGCCAACAT110.5045871559633028No Hit
CACCGTCGTTC110.5045871559633028No Hit
TAGGCCAGGAAATTGTTCATCGTCTGAACC110.5045871559633028No Hit
TAAGTTCGGTACGACTTTCGGAAGAGGT110.5045871559633028No Hit
TACGTCGTGTATGATGCGAGGCCTTGGAG110.5045871559633028No Hit
TGAACCGGAACCACAGAACTCAGAGTCAC100.45871559633027525No Hit
TCAAAAAAGAAGTTCTTTCCCGCGTTGGA100.45871559633027525No Hit
TCCCTACCCGGATGTATCTGTTTATCGACT100.45871559633027525No Hit
TTCTAGATCTGCCGAGAACTTTCCCTTAC100.45871559633027525No Hit
TGAACGGAGCCAGCTGCATCTCACCCTCTT90.41284403669724773No Hit
TCCCTAAACTCGCGTTCATTTCTGCCCT90.41284403669724773No Hit
TTGTAGAATGGAAGTTAGCGGCGCTGTT80.3669724770642202No Hit
TCTGCCGAGAACTTTCCCTTACCATACTTC80.3669724770642202No Hit
TGCAGAAATACCGCTGGCAGAAGCTCCACT80.3669724770642202No Hit
AAGGTATTGACGACACGACTGGTTCCGAAT80.3669724770642202No Hit
TTCCCTTACCATACTTCCACGACAAACAG70.3211009174311927No Hit
TACCTGTCCACTGCTGTACGAAGGCCTCT70.3211009174311927No Hit
TAAGCATGGTATCTATCTTGAGTTCGTCAAAC70.3211009174311927No Hit
TTCCCTACCCGGATGTATCTGTTTATCGACT70.3211009174311927No Hit
TTCCCTAAACTCGCGTTCATTTCTGCCCT70.3211009174311927No Hit
TGCGCCGAACCCGTTACATAGTTAGATCTC70.3211009174311927No Hit
TTAACGGCGCTGTTGGGTGGTCCCGAA60.27522935779816515No Hit
TGAGTGTCTTTTGTGAGTGGTCCCACCTC60.27522935779816515No Hit
TGTGTCTCAATATCGACAACGTGCACCGGT60.27522935779816515No Hit
TATACGGCGGTAACAATGTCCCAGAGGCT60.27522935779816515No Hit
TCCTGGGACACAAGATAGAATCTGCTCTAAT60.27522935779816515No Hit
TTAGCGGCGCTGTTGGGTGGTCCCGAAG60.27522935779816515No Hit
TGTTGTATCGACACCCGGCTGGGCCTCTC60.27522935779816515No Hit
TGAGTGTCTTTTCTGAGTGGTCCCACCTCCCCCGCCTGAAGGTGGTCCATCAGGGC50.22935779816513763No Hit
TTGATTGTCGTCGTCGTGGTCAGCCGTT50.22935779816513763No Hit
TCCCTAAACTCGCGTTCATTTCTGCCCTAGA50.22935779816513763No Hit
TACCCTATTATCTCGTCTGTCCCCAAAG50.22935779816513763No Hit
TACGCCCTCCGACTTGAAGGTACACAGCCT50.22935779816513763No Hit
TTATCTCGTCTGTCCCCAAAGTACATAATT50.22935779816513763No Hit
TATAGAATACAGCACCAGCAGCAGCAGAT50.22935779816513763No Hit
TTTGACTACCCAATCGCCATGTACGCCCTC50.22935779816513763No Hit
TGATTGTCGTCGTCGTGGTCAGCCATTACC50.22935779816513763No Hit
TACCCTATCCGGATGCTTGCAGCCTCTT50.22935779816513763No Hit
TAGTTGCTCCAGAATTGATAGACTGTCCTC50.22935779816513763No Hit
TCCCTACCCGGATGTATCTGTTTATCGACTAAG50.22935779816513763No Hit
AGTTAACGGCGCTGTTGGGTGGTCCCGAAG50.22935779816513763No Hit
TGAACCGGAACCACAGAACTCAGAGTCACTGT50.22935779816513763No Hit
TAGGCCAGGAAATTGTTCATCGTCTTTGGC50.22935779816513763No Hit
TCGTCTGAACCGGAACCACAGAACTCAGA50.22935779816513763No Hit
TTGTCGCATTAAGAAAAGATTCCCTACCCG50.22935779816513763No Hit
TGCGCCGAACCCGTTACATAGTTAGATCTCAT50.22935779816513763No Hit
TAAAAGGATCTGTTCGGGTAATGAGTGT50.22935779816513763No Hit
TCAACGTTTCGAAGGCCGTCGGTTCAGCT40.1834862385321101No Hit
AAGGACACGCCGCGTAGATCTGATCCAAACG40.1834862385321101No Hit
TAGGCGCAATCGTGGACGACGTGGAGGTGGTC40.1834862385321101No Hit
TTCGAAGGCCGTCGGTTCAGCTTGTGGT40.1834862385321101No Hit
TCCATCAGGGCTTTGTTGTACACTTCGGT40.1834862385321101No Hit
TCCCACCTCCCCCGCCTGAAAGTGGTCCATC40.1834862385321101No Hit
TAGAATGGAAGTTAGCGGCGCTGTTGGG40.1834862385321101No Hit
TCAACTTCTCCGAATACCCGTTGGCGTCT40.1834862385321101No Hit
TCCAGGCTCCCCACTCGTCTTCTGTGT40.1834862385321101No Hit
TATCGACACCCGGCTGGGCCTCTCTCAGT40.1834862385321101No Hit
TCCAGGCTCCCCACTCGTCTTCTGTGTT40.1834862385321101No Hit
TTCCACGAGTGCCACATAATCCCTAAGGG40.1834862385321101No Hit
TTATAATACGCCAGCGAAGGATCGTTCCC40.1834862385321101No Hit
AGTCGTCGTCGTG40.1834862385321101No Hit
TACCTAAATTTCCTCTACCATTCCTCGGAC40.1834862385321101No Hit
TTGTTAACAAGTGTTCCAGGCTCCCCACTC40.1834862385321101No Hit
ATGGTCTCTATTCTCAGCTGCAAGGGTT40.1834862385321101No Hit
TGATTGTCGTCGTCGTGGTCAGCCGTTA40.1834862385321101No Hit
TTTGACTACCCAATCGCCATGTACGCCCTCC40.1834862385321101No Hit
TAGATCTGCCGAGAACTTTCCCTTACCAT40.1834862385321101No Hit
TAATACGCCAGCGAAGGATCGTTCCCTAAA40.1834862385321101No Hit
TTTGACTACCCAATCGCCATGTACGCCCT40.1834862385321101No Hit
TGTATCGACACCCGGCTGGGCCTCTCTCAG40.1834862385321101No Hit
TTCGCGAAATCGTCTCCCTTGTAAATTGT40.1834862385321101No Hit
TCAAGGAGGTCCAAATTTCTTTCGGAATG40.1834862385321101No Hit
TCCATTACCCTATCCGGATGCTTGCAGCCT40.1834862385321101No Hit
TTTCCCTTACCATACTTCCACGACAAACAG40.1834862385321101No Hit
TGTACCTGTTTCCTGAGATGTACTTGCCT40.1834862385321101No Hit
TCAGAGTCACTGTTTGCTGAGGCAATCTT40.1834862385321101No Hit
TGAAAAATATGTTTCCCGGATATTGCCCAAA40.1834862385321101No Hit
TCTGAACCGGAACCACAGAACTCAGAGTCA40.1834862385321101No Hit
TGAACCGGAACCACAGAACTCAGAGTC30.13761467889908258No Hit
TATGGACACCCGGCTGGGCCTCTCTCAGT30.13761467889908258No Hit
TCCCTAATGAACGGAGCCAGCTGCATCTC30.13761467889908258No Hit
TACGTCGTGTATGATGCGAGGCCTTGGA30.13761467889908258No Hit
TAACAATGTCCCAGAGGCTGCTCCGACA30.13761467889908258No Hit
TACGGCGGTAACAATGTCCCAGAGGCTGCTCCGACA30.13761467889908258No Hit
TTTTTCAACAAGGTTCTTGGTTGGTTGGG30.13761467889908258No Hit
TCAACAAGGTTCTTGGTTGGTTGGGATG30.13761467889908258No Hit
TTCGCCGCAAAAGTCACCGTCGTTCTCATAGT30.13761467889908258No Hit
TTCCTTCTGGTGACCTGACGTTTCAACTCC30.13761467889908258No Hit
TCCCTTACCATACTTCCACGACAAACAGCT30.13761467889908258No Hit
TCTGTAATGTTTCGTTCCTTCTGGTGACCT30.13761467889908258No Hit
GGCCAGGAAATTGTTCATCGTCTGAACCGGAACCACAGAAC30.13761467889908258No Hit
TCATCGTCTGAACCGGAACCACAGAACTCA30.13761467889908258No Hit
TTATCAACTTCTCCGAATACCCGTTGGC30.13761467889908258No Hit
TCGACACCCGGCTGGGCCTCTCTCAGTCCACA30.13761467889908258No Hit
ACCGGAACCACAGAACTCAGAGTCACT30.13761467889908258No Hit
TTCTGACAACCTAACATAATCCCTA30.13761467889908258No Hit
AAGGAAACATA30.13761467889908258No Hit
TGAGGACTCCACGCTGAAATGCCCTGACCCT30.13761467889908258No Hit
TGAGGACTCCACGCTGAAATGCCCTGACCCG30.13761467889908258No Hit
TTAGATTCTCATGGTCCAAGGAAACATACT30.13761467889908258No Hit
TCCTGGGACACAAGATAGAATCTGCTCTAA30.13761467889908258No Hit
TTGTATCGACACCCGGCTGGGCC30.13761467889908258No Hit
TGCAGAAATACCGCTGGCAGAAGCTCCAC30.13761467889908258No Hit
TCTGAACCGGAACCACAGAACTCAGAGTCACT30.13761467889908258No Hit
TCCCCACTCGTCTTCTGTGTTTGCGCCGAAAA30.13761467889908258No Hit
TCAATATCGACAACGTGCACCGGTGCAAGG30.13761467889908258No Hit
TATACGGCGGTAACAATGTCCCAGAGGCTGC30.13761467889908258No Hit
TTTCCCTTACCATACTTCCACGACAAACAGC30.13761467889908258No Hit
TATCGACACCCGGCTGGGCCTCTCTCA30.13761467889908258No Hit
TGAAAGGAAACAAACTGGATTGCGGAAGGT30.13761467889908258No Hit
ACCGGAACCACAGAACTCAGAGTCACTGTTTGCTGA30.13761467889908258No Hit
TGGGTGGTCCCGAAGCCATAGAAGGATCTGT30.13761467889908258No Hit
TGACTACCCAATCGCCATGTACGCCCTCC30.13761467889908258No Hit
TCCGGATGCTTGCAGCCTCTTTTAACAAG30.13761467889908258No Hit
TGCTCTCTACTATCTTATAATACGCCAG30.13761467889908258No Hit
TACGTCGTGTATGATGCGAGGCCTTGGAA30.13761467889908258No Hit
TAATGTTTCGTTCCTTCTGGTGACCTGAC30.13761467889908258No Hit
ATGGTCTCTATTCTCAGCTGCAAGGGTTGT30.13761467889908258No Hit
GAGGACCCAACAACATTGTCGCATTAAGAAA30.13761467889908258No Hit
TCCTTCTGGTGACCTGACGTTTCAACTCC30.13761467889908258No Hit
ACCGGAACCACAGAACTCAGAGTCACTGT30.13761467889908258No Hit
TCTGCCGAGAACTTTCCCTTACCATACTT30.13761467889908258No Hit
TCTGAACCGGAACCACAGAACTCAGAGTCACTGTTTGCTGAGGCAATC30.13761467889908258No Hit
ACGGCGCTGTTGGGTGGTCCCGAAGCCATA30.13761467889908258No Hit
TGTGACACCACCAAACTTTCTCACGTCGTC30.13761467889908258No Hit
TCCACCTAGTCCCTCAAATCTACGATCATA30.13761467889908258No Hit
TATCAACTTCTCCGAATACCCGTTGGCGTC30.13761467889908258No Hit
TTGGAGATAGAGCAAGGTATTGACGACACA30.13761467889908258No Hit
AACGATCCGACCTGTTGTATCGACACCCGG30.13761467889908258No Hit
TTCAAACTCTTTATAGAATACAGCACCAGC30.13761467889908258No Hit
ACCGTTGGCGTC30.13761467889908258No Hit

[OK]Adapter Content

Adapter graph