FastQCFastQC Report
Mon 30 Nov 2020
S34.raw.2997.forward-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS34.raw.2997.forward-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111
Sequences flagged as poor quality0
Sequence length11-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTGAAGAAACTGTGCCCGGAGA98.108108108108109No Hit
CCCCTGTGAAGAAACTGTGCCCGGAGA87.207207207207207No Hit
GTCCGACGGCCCCTG65.405405405405405No Hit
TTACCGTCATCGCAGAACACCACGACCACGTCCACG54.504504504504505No Hit
CCTGTGAAGAAACTGTGCCCGGAGAA43.6036036036036037No Hit
ATGGTTATAAA43.6036036036036037No Hit
TTACAAGATCGAGGCCCCCACATCTCACT32.7027027027027026No Hit
TTACATAAAATTACAAGATCGAGGCCCC32.7027027027027026No Hit
TTCATCGAGCAGCAGCGTGGTCGCGTCAGC32.7027027027027026No Hit
AGAACAATTACTCGAGTTCGTTCGGAACCACCCTGCTGCGCCGTTGAAGC32.7027027027027026No Hit
TCATCGCAGAACACCACGACCACGTCCACG32.7027027027027026No Hit
GACCGACGGCCCCT21.8018018018018018No Hit
ATTACTCGAAATGTGTAGGTCAACCGAAGGAAGTCTACTGGAAGCAA21.8018018018018018No Hit
TATTACATAAAATTACAAGATCGAGGCCCC21.8018018018018018No Hit
TCGAGGCCCCCACATCTCACTTTCTGGCT21.8018018018018018No Hit
CGGGACTTCAAGAAAGGCGAGATGGGCAGTTTAAGCGCCCCAGAAATACGGGAGA21.8018018018018018No Hit
CCTGTGAAGAAACTGTGCCCGGAG21.8018018018018018No Hit
CCCCTGTGAAGAAACTGTGCCCGGAGAA21.8018018018018018No Hit
CGAGTTCGTTCGGAACCACCCTGCTGCGCCGTTGAAGCT21.8018018018018018No Hit
TCTACCAGCAAACCGCCAATTATGGATGTCGAGTCGGACGAAGAGTTATTCCCCGGCATGAGT21.8018018018018018No Hit
CATCGCAGAACACCACGACCACGTCCACGTTATACACGACTGTTCCTATCAATCCAACCAGTGCAGATGTGCCCA21.8018018018018018No Hit
CATCGCAGAACACCACGACCACGTCCACG21.8018018018018018No Hit
TAATAACGCATTTACCGTCATCGCAGAACACCACGACCACGTCCACGTTATACACG21.8018018018018018No Hit
TTTACCGTCATCGCAGAACACCACGACCACGTCCACGTTATACACG10.9009009009009009No Hit
TTAATAGGATT10.9009009009009009No Hit
CCCCTGTGAAGAAACTGTGCCCGGAGAAAGC10.9009009009009009No Hit
CCTGTGAAGAAACTGTGCCCGGAGAAAGC10.9009009009009009No Hit
TCCCAGACCGACGGCCCCTGTGAAGAAACTGTGCCCGGAGTAG10.9009009009009009No Hit
TAAATCCTAGTTCTAGACCGCCACAAAGA10.9009009009009009No Hit
GACCGACGGCCCC10.9009009009009009No Hit
TACAAGATCGAGGCCCCCACATCTCACT10.9009009009009009No Hit
AGACCGACGGCCCCTGT10.9009009009009009No Hit
CCTGTGAAGAAACTGTGCCCGGAGAAT10.9009009009009009No Hit
TTTGCCGGAAAACCGAATATAGAACCAAA10.9009009009009009No Hit
TCTAGTTCTAGATCGCCACATCGAATTTTATGGCGGTATTCTTTAGATTT10.9009009009009009No Hit
CTGTGAAGAAACTGTGCCCGGAGAAAGC10.9009009009009009No Hit
ACAATTACTCGAGTTCGTTCGGAACCACCCTGCTGCGCCGTT10.9009009009009009No Hit
GACTATAGGTCTGCTGCCCCCACTATT10.9009009009009009No Hit
TCACATGAAAGAGTCGTTCCCGAATACTC10.9009009009009009No Hit
CCTGTGAAGAAACTGTGCCCGGAGAACC10.9009009009009009No Hit
AACACCACGACCACGTCCACGTTATACACGACTG10.9009009009009009No Hit
ACTTCAAGAAAGGCGAGATGGGCAGTTTAAGCGCCCCAGAAATACGGG10.9009009009009009No Hit
TCATCGCAGAACACCACGACCACGTCCACGTTATACACGACTG10.9009009009009009No Hit
TCCGGAGCCAAAGTGCAAGTGCATTTGACT10.9009009009009009No Hit
CCCCTGTGAAGAAACTGTGCCCGGAG10.9009009009009009No Hit
TACGGGAGAACAATTACTCGAGTTCGTTCGGAACCACCCTGCTGCGCCGTTGAAGC10.9009009009009009No Hit
CCTGTGAAGAAACTGTGCCCGGA10.9009009009009009No Hit
GAGATTACTACGCAACAATTGACCCTG10.9009009009009009No Hit
TCTAGACCGCCACAAAGAACTTTACTACAG10.9009009009009009No Hit
TATTCCCCGGCATGAATTCACAATTAAGT10.9009009009009009No Hit
AGGAAGTCTACTGGAAGCAAGCAACT10.9009009009009009No Hit
TTTTTAGGAATGA10.9009009009009009No Hit
AAAGTTATTAATAACGCATTTACCGTCATCGCAGAACACCACGACCACGTCCACGTTATACACGACTGTTCCT10.9009009009009009No Hit
AACGCATTTACCGTCATCGCAGAACACCACGACCACGTCCACGTTATACACG10.9009009009009009No Hit
CCTGTGAAGAAACTGTGCCCGGAGAAAGCATCCGGAGCCAAAGTGCAAGTGCATTTGACTCCCGATCAGCA10.9009009009009009No Hit
TCCCCTGTGAAGAAACTGTGCCCGGAG10.9009009009009009No Hit
GACAGTGCAGATGTG10.9009009009009009No Hit
CCGACGGCCCCTGTGAAGAAACTGTGCC10.9009009009009009No Hit
ACTGTACTCAACAACAGAGCAATTGAATTGGCGGCT10.9009009009009009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)