FastQCFastQC Report
Mon 16 Nov 2020
S34.raw.12682.forward-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS34.raw.12682.forward-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474
Sequences flagged as poor quality0
Sequence length11-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCGATTCCCGGC10722.573839662447256No Hit
TACTTCAGCCTTTGAACGCCCCCGTTCTA255.274261603375527No Hit
TACTTCAGCCTTTGAACGCCCCCGTTCT214.430379746835443No Hit
GGTTCGATTCCCGGC194.008438818565401No Hit
TTCGATTCCCGGC132.7426160337552745No Hit
ATAAAATGCGCATAGCGACTCGGTGTCAG71.4767932489451476No Hit
AATGGTCACTGCATTCGCCTTGCACGCGGGA61.2658227848101267No Hit
TTCGGGGCCCACCTAGC61.2658227848101267No Hit
TGTGGAATCTGAGATTTGGGCAGCCGAG61.2658227848101267No Hit
TGTGGAATCTGAGATTTGGGCAGCCGAGA61.2658227848101267No Hit
TACTTCAGCCTTTGAACGCCCCCGTTCTAG51.0548523206751055No Hit
TGATCACTGCATTCGCCTTGCACGCGGGA40.8438818565400843No Hit
GTTCGATTCCCGG40.8438818565400843No Hit
TCCCTTACTTCAGCCTTTGAACGCCC40.8438818565400843No Hit
ACACAGTCAGGTG40.8438818565400843No Hit
GTTTTCGGGGCCCAC40.8438818565400843No Hit
TCGATTCCCGGC40.8438818565400843No Hit
CCTGTGACTGGCTGT30.6329113924050633No Hit
TGTGGAATCTGAGATTTGGGCAGCCGAGAG30.6329113924050633No Hit
GGCACAGTCAGGTGTAGGGTCATCCCGGGC30.6329113924050633No Hit
TACCTTCTAGTCCTCCAATAAGTTCGTTC30.6329113924050633No Hit
TGAGCATTGACGTAAAACCCTGGCATGTCG30.6329113924050633No Hit
TTCCCGGCGGGTGCGAAGATTTTTCGCATG30.6329113924050633No Hit
TGCATCCTGTAGGACTTGAGAGACGGCCGGT30.6329113924050633No Hit
TTGGTACAACCTTTGAGTCAGCTCCCATGGC30.6329113924050633No Hit
TATCCCGTGACTGGCTGTTTTCGGGGCCCACCTAGCCT30.6329113924050633No Hit
TCTTCCTTTTACTTCAGCCTTTGAACGCCC30.6329113924050633No Hit
TACCCACATATCCATCGTTCGGTGAAACAGC30.6329113924050633No Hit
AATGGTCACTGCATTCGCCTTGCACGCGGG30.6329113924050633No Hit
TACTTCAGCCTTTGAACGCCCCCGTTC30.6329113924050633No Hit
TTGGGTAAAATT20.42194092827004215No Hit
TGGTCACTGCATTCGCCTTGCACGCGGGA20.42194092827004215No Hit
TGCATCCTGTAGGACTTGAGAGACGGCCGG20.42194092827004215No Hit
TGTGCTCGAAGTCGTCTGTAGGTAAGTGC20.42194092827004215No Hit
ATGGTCACTGCATTCGCCTTGCACGCGGG20.42194092827004215No Hit
TGCATCCTGTAGGACTTGAGAGACGGCC20.42194092827004215No Hit
TTCGATTCCCGGCGG20.42194092827004215No Hit
TATCCTGTGACTGGCTGTTTTCGGGGCCCACCTAGCCTCGTGAGGAAAATAGGTAGCTA20.42194092827004215No Hit
GTCTATCCTGTGACTGGCTGTTTTCGGGGCCCACCTAGCCTCGTGAGGAA20.42194092827004215No Hit
TAGGACTTGAGAGACGGCCGGTAATGTA20.42194092827004215No Hit
TGAAGTTTGGTACAACCTTTGAGTCAGCT20.42194092827004215No Hit
TCAGCTCCCATGGCGCAATGATCACTGCATTCGCCT20.42194092827004215No Hit
TACTTCAGCCTTTGAACGCCCCCGTTCTAGT20.42194092827004215No Hit
CTCGTGAGGAAAATAGGTAGCTAGG20.42194092827004215No Hit
TAAGTTCGTTCATGAAGTAAGGGCCAGG20.42194092827004215No Hit
CTCCCATGGCGCAATGATCACTGCATTCGCCTTGCACGCGGGAAATCCGG20.42194092827004215No Hit
ATGTAAACTGTTCTATCCTGTGACTGGCTGTTTTCGGGGCCCACCTAGCC20.42194092827004215No Hit
TGTGGAATCTGAGATTTGGGCAGCCGAGT20.42194092827004215No Hit
TTTTAGAACATGACCGATCCCTCGGAGT20.42194092827004215No Hit
TATCCTGTGACTGGCTGTTTTCGGGGCCCACCTAGCCTCGTGAGGAAAATAGGTAACTATGAAATAAAATGCGCA20.42194092827004215No Hit
AACTGTTCTATCCTGTGACTGGCTGTTTTCGGGGCCCACCTAGCCTCGTGAGGAAAATAGG20.42194092827004215No Hit
TCACGGTCCTGATCTTCACTGTAGTGCATC20.42194092827004215No Hit
TCGCATGTAAACTCTTCTATCCTGTGACTGGCTGTTTTCGGGGCCCACCT20.42194092827004215No Hit
AGCCTCGTGAGGAAAATAGGTAGCTATGAAATAAAAT20.42194092827004215No Hit
ATGGTCACTGCATTCGCCTTGCACGCGGGAG20.42194092827004215No Hit
TGCTGTTACCCACATATCCATCGTTCGG20.42194092827004215No Hit
TACTTCAGCCTTTGAACGCCCCCGTTCTAT20.42194092827004215No Hit
TTCCTTTTACTTCAGCCTTTGAACGCCCC20.42194092827004215No Hit
CTTCTATCCTGTGACTGGCTGTTTTCGGGGCCCACCTAGCCTCGTGAGGA20.42194092827004215No Hit
AAATGTTCTATCCTGTGACTGGCTGTTTTCGGGACCCACCTAGCCTCGTGAGGAAAATAGG20.42194092827004215No Hit
TCTATCTTGTGACTGGCTGTTTTCGGGGC20.42194092827004215No Hit
ATGGTCACTGCATTCGCCTTGCACGCGGGA20.42194092827004215No Hit
TGTCAAATGTTCTACCCTGTGACTGGCTGTTTTCGGGGCCCACCTAGCCT10.21097046413502107No Hit
TATCCTGTGACTGGCTGTTTTCGGGACCCACCTAGCCTCGTGAGGAAAATAGGTAGCTATGAAAT10.21097046413502107No Hit
TAAGTTCGTTCATGAAGTAAGGGCCAGGG10.21097046413502107No Hit
AGGAATGTGGAA10.21097046413502107No Hit
TGTGGAATCTGAGATTTGGGCAGCCGAGAC10.21097046413502107No Hit
TCCTTTCTTTTTAGAACATGACCGATCCCT10.21097046413502107No Hit
TATCCATCGTTCGGTGAAACAGCTTTAAG10.21097046413502107No Hit
TCCCATGGCGCAATGGTCACTGCATTCGC10.21097046413502107No Hit
TCCCCTGTGACTGGCTGTTTTCGGGGCACACCTAGCCTCGTGAGGAAA10.21097046413502107No Hit
TCCTGTGACTGGCTGTTTTCGGGGCCCACC10.21097046413502107No Hit
GACTGGCTGTTTTCGGGACCCACCTAGCCTCGTGAGGAAAATAGGTAGCT10.21097046413502107No Hit
ACTGGCTGTTTTCGGGGCCCACCTAGCCT10.21097046413502107No Hit
TGGTCACTGCATTCGCCTTGCACGCGGGAG10.21097046413502107No Hit
TTTTACTTCAGCCTTTGAACGCCCCCGT10.21097046413502107No Hit
TGGTCACTGCATTCGCCTTGCACGCGG10.21097046413502107No Hit
TCACTGCATTCGCCTTGCACGCGGGAGACCT10.21097046413502107No Hit
TCAGCTCCCATGGCGCAATGATCACTGCAC10.21097046413502107No Hit
GCGCAATGGTCACTGCATTCGCCTTGCACGCGGGAG10.21097046413502107No Hit
TTCCCGGCGGGTGCGAAGATTTTTCGCATGT10.21097046413502107No Hit
TCGAAGTCGTCTGTAGGTAAGTGCGTTGTTTTCCAAACTCATGAAACTTCTTAGAG10.21097046413502107No Hit
TGGTCTTTTCTGATGATGTCTGCCAGCCT10.21097046413502107No Hit
TATCCTGTGACTGGCTGTTTTCGGGGCCCACCTA10.21097046413502107No Hit
CGCATAGCGACTCGGTGTCAGCATTG10.21097046413502107No Hit
TCGATTCCCGGCGGGTGCGAAGATTTTTCGC10.21097046413502107No Hit
TCACTGCATTCGCCTTGCACGCGGGAGACCC10.21097046413502107No Hit
TATCCTGTGACTGGCTGTTTTCGGGGCCCACCTAGCCTCGTGAGGAAAATAGGTAGCTG10.21097046413502107No Hit
TTTTTAGAACATGACCGATCCCTCGGAG10.21097046413502107No Hit
GGTTCGATTCCC10.21097046413502107No Hit
TATCCTGTGACTGGCTGTTTTCGGGACCCACCTAGCCTCGTGAGGAAAATAGGTAGCTA10.21097046413502107No Hit
AAGTCAGCTCCCATGGCGCGATGATCACTGCATTCGCCTTGCACGCGGT10.21097046413502107No Hit
TAGCGCAGAGTAATACGGATGCATCGTCA10.21097046413502107No Hit
AGCTCCCATGGCGCAATGGTCACTGCATTCGC10.21097046413502107No Hit
TAGCCTCGTGAGGAAAATAGGTAGCTA10.21097046413502107No Hit
CGATTCCCGGC10.21097046413502107No Hit
TCCTTAGACCTACAGTCTCGGCCGCTAG10.21097046413502107No Hit
TTGGCTGTTTTCGGGGCCCACCTAGC10.21097046413502107No Hit
TATGAGCATTGACGTAAAACCCTGGCATG10.21097046413502107No Hit
TCAGCTCCCATGGCGCAATGATCAATGCAT10.21097046413502107No Hit
TGTCAGCTCCCATGGCGCGATGATCACTGCATTCGCCTTGCACG10.21097046413502107No Hit
CTGTGACTGGCTGTTTTCGGGGCCCACGTAGCCTC10.21097046413502107No Hit
TCCCTTACTTCAGCCTTTGAACGCC10.21097046413502107No Hit
TCTGAGATTTGGGCAGCCGAGAGTT10.21097046413502107No Hit
CCAAAGTCGATAGGGAACAGTAATAGTGCTCTAATGGTTTCAAGGTCATC10.21097046413502107No Hit
TAAAGCGAGCTCTAATAGTGTCACGGTCCT10.21097046413502107No Hit
ATAGCGACTCGGTGTCAGCATTGTGGG10.21097046413502107No Hit
TCGCATGTAAAATGTTCTATCCTGTGACTGGCTGTTTTCGGGACCCACCTAGCCTCGTGAGGA10.21097046413502107No Hit
GTCAGCTCCCATGGCGCGATGATCACTGCATTCGCCTTGCACGCGGGA10.21097046413502107No Hit
TTCGCATGTAAACTCTTCTATCCTGTGACTGGCTGTTTTCGGGGCCCACCTAGCCTCGTGAGGAAAATAGGT10.21097046413502107No Hit
TATCCTGTGACTGGCTGTTTTCGGGGCCCACCTAGCTTCGTGAGGAAAATAGGT10.21097046413502107No Hit
CTGAGAGACGGC10.21097046413502107No Hit
TTTCGCATGTAAAATGTTCTATCCCGTGACTGGCTGTTTTCGGGGCCCACCTAGCCTCGTGAGGA10.21097046413502107No Hit
TTAGATCCAAAGTGAACACTTCGCTCATATTGGCTAGGTTTCGAGCATTGT10.21097046413502107No Hit
ATCCCATGGCGCAATGATCACTGCATTCGCCTTGCACGCGGGAGTCCCGGGTTCGATTCCCGGCGGGGGCGAAGA10.21097046413502107No Hit
GTGAGGAAAATAGGTAGCTATGAAATAAAATGCGCATA10.21097046413502107No Hit
TGGTACTGCATTCGCCTTGCACGCGGGAG10.21097046413502107No Hit
AATGCGCATAGCAACTCGGTGTCAGCACTGTGGGTAAAATTTAATTATCT10.21097046413502107No Hit
TTTTACTTCAGCCTTTGAACGCCCCCGTTCTA10.21097046413502107No Hit
TCAGCTCCCATGGCGCAATGGTCACTGCATTCGCCT10.21097046413502107No Hit
ATATTGTCAGCTCCCATGGCGCAATGATCACTGCATTCGCCTTGCACGCGGG10.21097046413502107No Hit
TGTGACTGGCAGTTTTCGGGGCCCACCT10.21097046413502107No Hit
AGCCTCGTGAGGAAAATAGGTAGGTA10.21097046413502107No Hit
TTTCGGGGCCCACCT10.21097046413502107No Hit
GTGACTGGATGTTTTCGGGGCCCACCTAGCCTCGTGAGGAAAATAGGTAGCTATGAAATAAATGCGCATAGCGAC10.21097046413502107No Hit
TTTCGGGGCCCACCTA10.21097046413502107No Hit
TGTGGAATCTGAGATTTGGGCAGCCG10.21097046413502107No Hit
TCACTGCATTCGCCTTGCACGCGGGAG10.21097046413502107No Hit
CCGAGTTCGATTCCCGGCGGGGGCAA10.21097046413502107No Hit
TGTGATGCTCCCTTCTTGTTTTGACTATC10.21097046413502107No Hit
TCCTGTAGGACTTGAGAGACGGCCGGTAAT10.21097046413502107No Hit
CTTAGCCTCGTGAGGAA10.21097046413502107No Hit
TGGTACTGCATTCGCCTTGCACGCGGGA10.21097046413502107No Hit
CTGGCTGTTTTCGGGGCCCATCTAGCCT10.21097046413502107No Hit
GATTTTTCGCATGTAAACTGTTCTATCCTGTGACTGGCTGTTTTCGGGGCC10.21097046413502107No Hit
TCTCCAAAACATCTTCCTTTTCTTGCAAAT10.21097046413502107No Hit
AGGACTTGAGAGACGGCCGGTAATGTAGGTATA10.21097046413502107No Hit
TGTGACTGGTTGTTTTCGGGGCCCACCT10.21097046413502107No Hit
TGTGACTGGCTGTTTTCGGGGCCCACCTAGCCTCGTGAGGAA10.21097046413502107No Hit
TCAGCCTTTGAACGCCCCCGTTCTA10.21097046413502107No Hit
CCATGGCGCAATGATCACTGCATTCGCCTTGCACGCGGGAGACCCGGGTTCGATTCCC10.21097046413502107No Hit
AAATGTTCTATCCTGTGACTGGCTGTTTTCGGGGCCCACCTAGCCTCGTGAGGAAAATAGGTAGC10.21097046413502107No Hit
TCTATCCTGTGACTGGCTGTTTTCGGGGCCCACCTAGCCTCGTGAGGAAA10.21097046413502107No Hit
TCTTCCTTTTACTTCAGCCTTTGAACGCCCC10.21097046413502107No Hit
TCTCCCCCTGTCCTCCCTGCTGTTACCCACA10.21097046413502107No Hit
CCGGCGGGGGC10.21097046413502107No Hit
TTCCCGGCGGGGGCGAA10.21097046413502107No Hit
CTAGCCTCGTGAGGAAAATAGGTAGCTATGAAATAGAATGCGCATAGCGACTCGGTGTCAGCATTGTAGGTAAAA10.21097046413502107No Hit
TCACTGCTTGTCATGGCCTGTTCGGGCAAG10.21097046413502107No Hit
ATGGCGCAATGATCACTGCATTAGCCTTGCACGCGGGAG10.21097046413502107No Hit
CAATCCCGGGCCATA10.21097046413502107No Hit
ATAAAATGCGCATAGCGACTCGGTGTCAGC10.21097046413502107No Hit
TCTTTTTAGAACATGACCGATCCCTCGGAG10.21097046413502107No Hit
GCGCATAGCGACTCGGT10.21097046413502107No Hit
TCAGCTCCCATGGCGCAATGATCACTGCATTCGCCTTGCACGCGGGAGTC10.21097046413502107No Hit
TCAGCTCCCATGGCGCAATGGTCACTGC10.21097046413502107No Hit
AAGCATTGTGATG10.21097046413502107No Hit
TCAGCTCCCATGGCGCAATGATCACTGCATTCGCCTTGCACGCGGGAGTCTCGGGTTCGATTCCCGGC10.21097046413502107No Hit
TAGTGCATCACTACAACCTGGTTGTCGCC10.21097046413502107No Hit
AGCTCCCATGGCGCAAT10.21097046413502107No Hit
CACCTAGCCTCGTGAGGAAAATAGGTAGCT10.21097046413502107No Hit
GTTCGATTCCCGGCGGGGGCGAAGATTTTTCGCATGTAAAATGTTCTATCCTGTGACTGACT10.21097046413502107No Hit
TGCTGTTACCCACATATCCATCGTTCGGT10.21097046413502107No Hit
AGATTTTTCGCATGTAAACTGTTCTATCCTGTGACTGGCTGTTTTCGGGG10.21097046413502107No Hit
CGAGTTCGATTCCCGGCGGGGTC10.21097046413502107No Hit
ATCCCGTGACTGGCTGTTTTCGGGGCCCACCTAGCCTCGTGAGGA10.21097046413502107No Hit
CCTGTGACTGGCTGTT10.21097046413502107No Hit
TTTACTTCAGCCTTTGAACGCCCCCGTTCTA10.21097046413502107No Hit
GCGCATAGCGACTCGGTGTCAGCATTGTAGGTA10.21097046413502107No Hit
TCCGACGTTGCTGTTTTGATAGAACTCGT10.21097046413502107No Hit
TGATAATGAAGGCACAGTCAGGTGTAGGG10.21097046413502107No Hit
TCTCACTGCTTGTCATGGCCTGTTCGGGCAAG10.21097046413502107No Hit
TCTGATTGATA10.21097046413502107No Hit
TTTGACGCATACCTTCTAGTCCTCCAATA10.21097046413502107No Hit
TGTGACTGGATGTTTTCGGGGCCCACCTAGC10.21097046413502107No Hit
TACTTCAGCCTTTGAACGCCCCCGT10.21097046413502107No Hit
CTAATGTAGGTA10.21097046413502107No Hit
GAAATAAAATGCGCATAGCGACTCGGTGTCAGCATTGTGGGTAAAATTTA10.21097046413502107No Hit
TACCCACATATCCATCGTTCGGTGAAACAGCT10.21097046413502107No Hit
TATCTTGTGACTGGCTGTTTTCGGGGC10.21097046413502107No Hit
TGTACCGTGCCTGCATAATCTGATTGATAAT10.21097046413502107No Hit
TCACTGCATTCGCCTTGCACGCGGGAGA10.21097046413502107No Hit
ACTCGGTGTCAGCATTGTGGGTAAAAATC10.21097046413502107No Hit
TTTGAACGCCCCCGTTCTAGTTGAAGCC10.21097046413502107No Hit
TGATCACTGCATTCGCCTTGCACGCGGGAG10.21097046413502107No Hit
TGCTCGAAGTCGTCTGTAGGTAAGTGCGT10.21097046413502107No Hit
TTCTACCCTGTGACTGGCTGTTTTCGGGGCCCACCTAGCCTCGTGAGGAAAATAGG10.21097046413502107No Hit
TTTGATAGAACTCGTGACCTAGCGCAGAGTAATACGGATGCATCGTCATT10.21097046413502107No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)