FastQCFastQC Report
Mon 16 Nov 2020
S34.raw.16463.reverse-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS34.raw.16463.reverse-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences189
Sequences flagged as poor quality0
Sequence length11-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCCCCGCCTGCCTATATGAG178.994708994708994No Hit
TATTACGGCCGCCGATTTGTTTCTCTTGG63.1746031746031744No Hit
TATTACGGCCGCCGATTTGTTTCTCTTGGC63.1746031746031744No Hit
CCCCCCGCCTGCCTATATGAG63.1746031746031744No Hit
CCCCCCCGCCTGCCTATATGAG52.6455026455026456No Hit
CCCCCCGCCTGCCTATATGAGT52.6455026455026456No Hit
ACCCCCCGCCTGCCTATATGAGT52.6455026455026456No Hit
TTATTACGGCCGCCGATTTGTTTCTCTT42.1164021164021163No Hit
TGAAAGTTCAATTTATTTATTACGGCCGCC31.5873015873015872No Hit
TACGGCCGCCGATTTGTTTCTCTTGG31.5873015873015872No Hit
TTTTCCACCCCCCGCCTGCCT31.5873015873015872No Hit
TTGAACCAATCTCATG31.5873015873015872No Hit
CCCCCGCCTGCCTATATGAGTT31.5873015873015872No Hit
CCCCGCCTGCCTATATGAGTTGAACCCATCTCA31.5873015873015872No Hit
CACCCCCCGCCTGCCTATATGA31.5873015873015872No Hit
CACCCCCCGCCTGCCTATATGAGTTGAACC31.5873015873015872No Hit
CACCCCCCGCCTGCCTATATGAA21.0582010582010581No Hit
ACCCCCCGCCTGCCTATATGAC21.0582010582010581No Hit
CACCCCCCTCCTGCCTATATGA21.0582010582010581No Hit
AGCTTTTCCACCCCCCGCCTGCCTA21.0582010582010581No Hit
CTTAGGTTATTTCCACCCCCCGCCTGCCTATATGAGT21.0582010582010581No Hit
CCCCCGCCTGCCTATAT21.0582010582010581No Hit
TGCCACTTGGGAGCGCTAGTAGTAAAAACAG21.0582010582010581No Hit
CACCCCCGCCTGCCTATATGAG21.0582010582010581No Hit
TTACGGCCGCCGATTTGTTTCTCTTGG21.0582010582010581No Hit
TTTTCCACCCCCCGCCTGCCTATATGAGTT21.0582010582010581No Hit
CGCCCGCCGGTTTGTTTCTCTTGG21.0582010582010581No Hit
TAGGAAGTGGCTACTCG21.0582010582010581No Hit
CACCCCCGCCTGCCT21.0582010582010581No Hit
CTCCACCCCCCGCCT21.0582010582010581No Hit
ACCCCCCGCCTGCCTATATGA21.0582010582010581No Hit
CCCGCCTGCCTATATGAGTTGAA21.0582010582010581No Hit
CGGGGGGGAGTTT21.0582010582010581No Hit
CCCCCCGCCTGCCTAT21.0582010582010581No Hit
TCCACCCCCCGCCTGCCTATGTGAGTTGAAC21.0582010582010581No Hit
CACCCCCCGCCTGCCTATATGAG10.5291005291005291No Hit
TCCACCCCCCGCCTGCCTATAT10.5291005291005291No Hit
TTTATTACGGCCGCCGATTTGTTTCTCTT10.5291005291005291No Hit
AAACTTAATTA10.5291005291005291No Hit
CCCCGCCTGCCTATAT10.5291005291005291No Hit
ACCCCCCGCCTGCCTATGTGAGTTGAACC10.5291005291005291No Hit
CAGTAGATTACAGGCC10.5291005291005291No Hit
AACGAAGCCTC10.5291005291005291No Hit
CACCCCCGCCTGCCTATATGA10.5291005291005291No Hit
CCCCGCCTGCCTATATGAGTTGAACC10.5291005291005291No Hit
TTCCACCCCCCGCCTGCCTATATGAGTTGAA10.5291005291005291No Hit
TATTACGGCCGCCGATTTGTTTCTCTTG10.5291005291005291No Hit
TTTCCACCCCCCGCCTGCCTATATG10.5291005291005291No Hit
TTATTACGGCCGCCGATTTGTTTCTCTTG10.5291005291005291No Hit
GTAAAAACAGAACTCTCTATAGTAGGCTT10.5291005291005291No Hit
CACGGCCGCCGG10.5291005291005291No Hit
AGAATTCCAGTTA10.5291005291005291No Hit
TCCACCCCCCGCCTGCCTATATGAGTTGAACCAATC10.5291005291005291No Hit
GGCCGCCGGTTTGTTTCTCTTGGC10.5291005291005291No Hit
ATTTTAGGTTCT10.5291005291005291No Hit
TAGGAAACGAAGCCTCAAAAACGCCTTTTC10.5291005291005291No Hit
ACCCCCCGCCTG10.5291005291005291No Hit
TGCGAGCTCCG10.5291005291005291No Hit
ACCCCCCGCCTGCCTATATGAGTT10.5291005291005291No Hit
TCCACCCCCGCCTGCCTATATGAGTTGA10.5291005291005291No Hit
TGCCACTTGGGAGCGCTAGTAGTAAAAACA10.5291005291005291No Hit
CCACCCCCCGTCTGCCTATATGAGTTGAAC10.5291005291005291No Hit
ACCCCCGCCTGCCTATATGA10.5291005291005291No Hit
CCTCCGCCTGCCTATATGAGT10.5291005291005291No Hit
TGTTTCTCTTGGCGAGTACTTTACGCGT10.5291005291005291No Hit
GAAGCCTCAAAAACGCCT10.5291005291005291No Hit
TAGGAAACGAAGCCTCAAAAACGCC10.5291005291005291No Hit
CCACCCCCCGCCTGCCTATA10.5291005291005291No Hit
ATGCAGGACACTTGTGACCACACGAG10.5291005291005291No Hit
CACCCCCGCCTGCCTATATGAGTT10.5291005291005291No Hit
CCGGCGTGCGGCAC10.5291005291005291No Hit
ACAAATGTTGTACTATTTTATTTCTGTATGTA10.5291005291005291No Hit
TTTCCACCCCCCGCCTGCCTATATT10.5291005291005291No Hit
TTTATTACGGCCGCCGATTTGTTTCTCTTG10.5291005291005291No Hit
CCCTGCCTGCCTATATGAGTTGAACC10.5291005291005291No Hit
AGTAGTAAAAACAGCACTCTCTATAGTAGGCTTCGGTT10.5291005291005291No Hit
CCCCCGCCTGCCTATATGAGTTGAACCC10.5291005291005291No Hit
TTCCACCCCCCGCC10.5291005291005291No Hit
TACTTGGGAGCGCTAGTAGTAAAAACAGC10.5291005291005291No Hit
TCCCCCCCGCCTGCC10.5291005291005291No Hit
TATAATACATTCTTAAATAATACCCCCCAA10.5291005291005291No Hit
AGCCTCAAAAACGCCTTTTCACGCAAATAATTAGGGGAAAGCTGAATTTTGGATATGTGATAGAACATGTTAAGA10.5291005291005291No Hit
TTTCCACCCCCCTCCTGCCTATATGAGTT10.5291005291005291No Hit
TTTTCACGCAAATAATTAGGGGAAAGCTGAATTTTGGATATGTGATAGAACATGTT10.5291005291005291No Hit
CCCCCCGCCTGCCT10.5291005291005291No Hit
CCCCGCCTGCCTATATGAGTTGAACCC10.5291005291005291No Hit
TTATTTATTACGGCCGCCGATTTGTTTCT10.5291005291005291No Hit
CCCCGCCTGCCTATATGA10.5291005291005291No Hit
CGGGCAAATAATGTTACAAAGTGAACGCTCGAGTTATGCTTCTGAAGAG10.5291005291005291No Hit
ACCCCCGCCTGCCTATATGAGTTGAACC10.5291005291005291No Hit
CACCCCCCGCCTGCCTATATGAGTTG10.5291005291005291No Hit
CTCCACCCCCCGCC10.5291005291005291No Hit
TCTTAAATAATACCCCCCAAGATTACATAAACCTTCTTGTTA10.5291005291005291No Hit
TTCCACCCCCCTCCTGCCTATATGAG10.5291005291005291No Hit
CTACTCGCCCGCCCG10.5291005291005291No Hit
TTTCCACCCTCCGCCTGCCTATATG10.5291005291005291No Hit
CACCCCCCTCCTGCCTATATGAGTT10.5291005291005291No Hit
TTCCACCCCCCGCCTGCCTATA10.5291005291005291No Hit
GGCTTAGGTTATTGTTAGGTTATTTCCACCCCCCGCCTGCCTATATGA10.5291005291005291No Hit
GTAATGAATTG10.5291005291005291No Hit
CGTCTCCCGGTGTGGTGTACTAACTGATAGTCTGCAAGATGCTGGAGCAT10.5291005291005291No Hit
CCCCGCCTGCCTATATG10.5291005291005291No Hit
CCCCGCCTGCCTATATGAGTT10.5291005291005291No Hit
CTTTTCACGCAAATAATTAGGGGAAAGCTGAATTTTGGATATGTGATAGAACA10.5291005291005291No Hit
TTATTACGGCCGCCGATTTGTTTCTCTTGGCGAG10.5291005291005291No Hit
TGTTAGGTTATTTCCACCCCCCGCCTGCCTATATGAGTTGAAC10.5291005291005291No Hit
CCCCCCGCCTG10.5291005291005291No Hit
TAGTAAAAACAGAACTCTCTATAGTAGGCT10.5291005291005291No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)