FastQCFastQC Report
Mon 16 Nov 2020
S34.raw.3452.forward-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS34.raw.3452.forward-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44
Sequences flagged as poor quality0
Sequence length11-21
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGACTTGAAT1840.909090909090914No Hit
AGGACTTGAAT1125.0No Hit
GGGAAGTCGGC49.090909090909092No Hit
ACGAAGCCAGCG36.8181818181818175No Hit
TAATAAAAAAAAA24.545454545454546No Hit
CTCCGCGGTCT24.545454545454546No Hit
TAACCCGGCACT12.272727272727273No Hit
CTTGCAAACCCGGCACTGGTC12.272727272727273No Hit
AGAAACTAACG12.272727272727273No Hit
AGGGAAGTCGGC12.272727272727273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)