FastQCFastQC Report
Wed 8 Jan 2025
SRR2125764.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2125764.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14402391
Total Bases690.1 Mbp
Sequences flagged as poor quality0
Sequence length20-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCTC2297881.595485082997677No Hit
TCGGGAGTTCGAATCTCTCTGAGCGCACCA1498071.0401536800382658No Hit
TTGATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACT1409670.9787749825706022No Hit
AATACTAATTGCTCGTGAGGCTTGACT1118410.7765446723394748No Hit
GACCAATACTAATTGCTCGTGAGGCTTGACT975680.6774430717788456No Hit
ACCAATACTAATTGCTCGTGAGGCTTGACT708200.49172390889818224No Hit
TGACCAATACTAATTGCTCGTGAGGCTTGACT629910.4373648792065151No Hit
TGCTGGCGACAATAGCAAGAGTGAACCACCTGATCCCTTCCCGAACTCAG544900.37833995758065453No Hit
TAGTGATATGTGAAGCTGACCAATACTAATTGCTCGTGAGGCTTGACT526710.365710110217116No Hit
AGTGATATGTGAAGCTGACCAATACTAATTGCTCGTGAGGCTTGACT506080.3513860997108049No Hit
ATACTAATTGCTCGTGAGGCTTGACT482070.3347152566542597No Hit
TTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTAATTGCTC463750.3219951465003276No Hit
GCTGACCAATACTAATTGCTCGTGAGGCTTGACT460620.3198218962393119No Hit
CGGGAGTTCGAATCTCTCTGAGCGCACCA437780.3039634182963093No Hit
CTGATGGTAGTGTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCTC433370.3009014267144948No Hit
TGATGGTAGTGTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCTC415590.2885562543052747No Hit
GCTGATGGTAGTGTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCTC374170.2597971406275527No Hit
TGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA363560.25243030827311935No Hit
GAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA341290.2369675979495349No Hit
GATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTAA339850.2359677639636363No Hit
GTCGGGAGTTCGAATCTCTCTGAGCGCACCA333240.23137824823669906No Hit
TTGTAATCAGTAGGTCCACAGTTCGAATCCGTGTGCCGGCACCA328400.22801769511742878No Hit
GTGATATGTGAAGCTGACCAATACTAATTGCTCGTGAGGCTTGACT294430.20443133365841823No Hit
ACGTTGATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAAT293400.203716174626838No Hit
ATCCATGTGAGAGTAAGTCATCGCCAGCTC271940.18881587092032148No Hit
ATCTCGAATCGCCACTTCTCTTATCTGGTGGGCTCTGCCCGCCCTTGTCG259650.18028256558233977No Hit
CCCGAACTCAGAAGTGAAACCTCTTAGCGCTGATGGTAGTGTGGAGTTAT255740.17756773857896233No Hit
TAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTAATT254140.17645681192796392No Hit
TTCCCGAACTCAGAAGTGAAACCTCTTAGCGCTGATGGTAGTGTGGAGTT251180.17440159762361682No Hit
TGATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTA248290.17239498636025088No Hit
AGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA242900.1686525522046999No Hit
ACGACGTTGATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACC239880.16655567815094036No Hit
ATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTAAT238740.16576414291210398No Hit
CCGAACTCAGAAGTGAAACCTCTTAGCGCTGATGGTAGTGTGGAGTTATC228890.15892500071689486No Hit
ATAGTGATATGTGAAGCTGACCAATACTAATTGCTCGTGAGGCTTGACT228260.15848757334806424No Hit
AACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA227650.15806403256237106No Hit
AACTCAGAAGTGAAACCTCTTAGCGCTGATGGTAGTGTGGAGTTATCCAT225110.15630043650391104No Hit
AAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA222940.15479374223349443No Hit
AGTTATCCATGTGAGAGTAAGTCATCGCCAGCTC221410.15373141862347717No Hit
GGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA218230.15152345190461777No Hit
CTTCCCGAACTCAGAAGTGAAACCTCTTAGCGCTGATGGTAGTGTGGAGT215590.14969042293047036No Hit
AGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTAATTG215380.14954461380752682No Hit
CGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA212100.14726721417298003No Hit
CAATACTAATTGCTCGTGAGGCTTGACT209130.14520505657706417No Hit
CAGTAATGCATTAAGCTAACCAGTACTAATTGCCCGTGCGGCTTGACC206240.14319844531369827No Hit
TATCCATGTGAGAGTAAGTCATCGCCAGCTC198370.13773407484909972No Hit
CCAATACTAATTGCTCGTGAGGCTTGACT197700.13726887431399412No Hit
CTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA197620.1372133279814442No Hit
CGCTGATGGTAGTGTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCT194470.13502619113729103No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCCACGTTG182360.12661786504754663No Hit
AGACGTGTTGACTCAATTCATTCCGTGCGAAAGCCGAGCCTTGTTGCTCG177910.12352810029945722No Hit
TTAACTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCTT177400.12317399242945147No Hit
CAGTAATGCATTAAGCTAACCAGTACTAATTGCCCGTGCGGCTTGAC173980.12079938671294232No Hit
TCCCGAACTCAGAAGTGAAACCTCTTAGCGCTGATGGTAGTGTGGAGTTA170360.11828591516505836No Hit
TAACTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCTTA170300.11824425541564591No Hit
ACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA167300.11616126794502385No Hit
GCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA165450.11487675900480691No Hit
GAGCACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCG163390.11344644094164642No Hit
AATTCCACCACGTTCCCGTGG162370.11273822520163493No Hit
AGCTGACCAATACTAATTGCTCGTGAGGCTTGACT161530.11215498870986074No Hit
GACGTTGATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAA160440.11139816992886806No Hit
ACTCAGAAGTGAAACCTCTTAGCGCTGATGGTAGTGTGGAGTTATCCATG156890.10893330142196528No Hit
CACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCAC154670.10739189069370496No Hit
TAGAGCACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAG150600.10456597102522769No Hit
ACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACC149790.10400356440815972No Hit
TTATTGAGGATTGTTTAAAATTGAATAAAAAGGCTTTT149630.10389247174305988No Hit
GTTATCCATGTGAGAGTAAGTCATCGCCAGCTC148910.10339255475011058No Hit
GTGGGGTTACCCATGTGAGAGTAAGTCATCGCCAGCTC144280.10017781075378387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)