FastQCFastQC Report
Wed 8 Jan 2025
SRR2125765.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2125765.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5635495
Total Bases270.3 Mbp
Sequences flagged as poor quality0
Sequence length20-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGGAGTTCGAATCTCTCTGAGCGCACCA961791.7066646319444874No Hit
GACCAATACTAATTGCTCGTGAGGCTTGACT934911.6589669585369164No Hit
AATACTAATTGCTCGTGAGGCTTGACT615721.092574831492176No Hit
GTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCTC474990.8428540882389214No Hit
ATCTCGAATCGCCACTTCTCTTATCTGGTGGGCTCTGCCCGCCCTTGTCG431010.764813028846623No Hit
CGGGAGTTCGAATCTCTCTGAGCGCACCA427840.7591879684038403No Hit
TTGATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACT411470.7301399433412682No Hit
TCTCGAATCGCCACTTCTCTTATCTGGTGGGCTCTGCCCGCCCTTGTCGG389380.690941966943454No Hit
ACCAATACTAATTGCTCGTGAGGCTTGACT337480.598847128779282No Hit
GTCGGGAGTTCGAATCTCTCTGAGCGCACCA279960.4967797859815331No Hit
TGCTGGCGACAATAGCAAGAGTGAACCACCTGATCCCTTCCCGAACTCAG273990.4861862178921284No Hit
TAGTGATATGTGAAGCTGACCAATACTAATTGCTCGTGAGGCTTGACT224320.3980484411750876No Hit
ATACTAATTGCTCGTGAGGCTTGACT216330.38387044971204837No Hit
TGACCAATACTAATTGCTCGTGAGGCTTGACT212220.3765773902736139No Hit
CTGATGGTAGTGTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCTC209300.37139594658499386No Hit
AGTGATATGTGAAGCTGACCAATACTAATTGCTCGTGAGGCTTGACT199640.354254595204148No Hit
GAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA179920.31926210563579593No Hit
TTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTAATTGCTC174980.31049623857354147No Hit
TGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA142870.25351810266888714No Hit
TGATGGTAGTGTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCTC140590.24947231787092347No Hit
TTGTAATCAGTAGGTCCACAGTTCGAATCCGTGTGCCGGCACCA134100.2379560269328604No Hit
GCTGACCAATACTAATTGCTCGTGAGGCTTGACT126700.2248249710096451No Hit
GATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTAA125270.22228748317583458No Hit
AACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA121300.2152428491197313No Hit
AGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA118900.21098412827976956No Hit
ACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACC118830.21085991558860404No Hit
TTCCCGAACTCAGAAGTGAAACCTCTTAGCGCTGATGGTAGTGTGGAGTT113080.2006567302428624No Hit
CCCGAACTCAGAAGTGAAACCTCTTAGCGCTGATGGTAGTGTGGAGTTAT112900.20033732617986533No Hit
CACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCAC112050.19882902921571222No Hit
GCTGATGGTAGTGTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCTC110320.19575920127690646No Hit
TAGAGCACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAG110230.1955994992454079No Hit
CGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA108290.19215703323310554No Hit
AAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA105390.18701107888481847No Hit
ATCCATGTGAGAGTAAGTCATCGCCAGCTC104970.18626580273782517No Hit
GTCCCTATCGTCTAGAGGCCTAGGACATCGCCCTTTCACGGCGGTAACCG104380.18521886719800124No Hit
CGCTGATGGTAGTGTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCT103660.1839412509460127No Hit
GAGCACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCG102420.18174091184536584No Hit
TATCCATGTGAGAGTAAGTCATCGCCAGCTC101360.1798599768077161No Hit
ACGTTGATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAAT94350.16742096302099463No Hit
TGATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTA91550.1624524553743726No Hit
CAGTAATGCATTAAGCTAACCAGTACTAATTGCCCGTGCGGCTTGAC90380.16037632896489126No Hit
AGCACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGC90110.1598972228703956No Hit
GATAGAGCACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTG90100.15987947820022907No Hit
ATAGAGCACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGA88340.15675641625092382No Hit
GGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA87910.15599339543376403No Hit
ACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA85610.15191212129546738No Hit
ATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTAAT84760.1504038243313143No Hit
TAACTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCTTA84610.15013765427881667No Hit
CTTCCCGAACTCAGAAGTGAAACCTCTTAGCGCTGATGGTAGTGTGGAGT83820.1487358253356626No Hit
AACTCAGAAGTGAAACCTCTTAGCGCTGATGGTAGTGTGGAGTTATCCAT82650.14665969892618128No Hit
CCGAACTCAGAAGTGAAACCTCTTAGCGCTGATGGTAGTGTGGAGTTATC81400.14444161515536788No Hit
CAATACTAATTGCTCGTGAGGCTTGACT80990.1437140836785411No Hit
GTGATATGTGAAGCTGACCAATACTAATTGCTCGTGAGGCTTGACT79970.14190412732155738No Hit
AGAGCACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGC79110.14037808568723775No Hit
ACGACGTTGATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACC78700.13965055421041098No Hit
GCACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCA78640.13954408618941194No Hit
AGTTATCCATGTGAGAGTAAGTCATCGCCAGCTC78400.13911821410541578No Hit
TTAACTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCTT78150.13867459735125306No Hit
CTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA76640.13599515215611052No Hit
GTTATCCATGTGAGAGTAAGTCATCGCCAGCTC75810.13452234453229042No Hit
ATAGTGATATGTGAAGCTGACCAATACTAATTGCTCGTGAGGCTTGACT74750.13264140949464065No Hit
GCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA73990.13129281456198613No Hit
CTGGATAGAGCACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCT73470.13037009171332775No Hit
CTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA73260.12999745363983112No Hit
CCACCACGTTCCCGTGGACCACGTTCCCGTGG72140.1280100505811823No Hit
TGCTGGCGACAATAGCAAGAGTGAACCACCTGATCCCTTCCCGA70590.12525962670537372No Hit
GGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA69350.12305928760472683No Hit
CAGCTGGATAGAGCACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATC67900.12048631043058329No Hit
CCAATACTAATTGCTCGTGAGGCTTGACT66210.11748746117244359No Hit
TAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTAATT65550.11631631294145411No Hit
TCCCGAACTCAGAAGTGAAACCTCTTAGCGCTGATGGTAGTGTGGAGTTA63030.11184465605949433No Hit
CCACCACGTTCCCGTGGCACCACGTTCCCGTGG62840.11150750732633069No Hit
AGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTAATTG60410.10719555247586947No Hit
GCTGGATAGAGCACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTC60200.10682291440237282No Hit
CAGTAATGCATTAAGCTAACCAGTACTAATTGCCCGTGCGGCTTGACC59030.1047467879928915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)