FastQCFastQC Report
Wed 8 Jan 2025
SRR2125768.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2125768.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33861679
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length20-51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATATCGAGTAACATTTGGAGGAC1158120.34201493670765704No Hit
TTATTGAGGATTGTTTAAAATTGAAT1026670.3031952432128366No Hit
AATATCGAGTAACAGTTGGAGGAC930570.274815079311336No Hit
AGACGTGTTGACTCAATTCATTCCGTGCGAAAGCCGAGCCTTGTTGCTCG651070.1922733955395419No Hit
ACGGAATCACGTAGACCCACTTGGGACCGAGT592480.1749706504512077No Hit
CCCGCTTGATCAAAAGAGCGGGGAAACCACGGAATCACGTAGACCCACTT518440.15310522552647196No Hit
AGTGCATGGTTGTTTTCAATGGGGGATACTCAAACCCATCCAATATCGAG501090.14798143943187222No Hit
ACGTAGACCCACTTGGGACCGAGTATTGCAATTATTGGTCGCGCAACGAG468850.13846035218749783No Hit
AAAAGAGCGGGGAAACCACGGAATCACGTAGACCCACTTGGGACCGAGTA441910.1305044560844133No Hit
AAATGTGTTTCATCGTCTACTTATTACC432260.12765462693093277No Hit
ATCGAGTAACATTTGGAGGAC430270.12706694195524093No Hit
CTTGATCAAAAGAGCGGGGAAACCACGGAATCACGTAGACCCACTTGGGA408020.12049609235265622No Hit
ATGACCTCGAACTGTGGCACCATTTTTGTGGCCGTTCTT406070.11992022014029487No Hit
CACGTAGACCCACTTGGGACCGAGTATTGCAATTATTGGTCGCGCAACGA405600.11978142017116164No Hit
AATGTCGCTCCCGCTTGATCAAAAGAGCGGGGAAACCACGGAATCACGTA403280.11909627989799323No Hit
ACGGAATCACGTAGACCCACTTGGGACCGAGTATTGCAATT393820.11630256137033251No Hit
ATATGACCTCGAACTGTGGCACCATTTTTGTGGCCGTTCTT390840.11542251050221106No Hit
ACGGAATCACGTAGACCCACTTGGGACCGAGTATTGC378610.11181075811391396No Hit
CACGGAATCACGTAGACCCACTTGGGACCGAGT374060.1104670562850708No Hit
TCACGTAGACCCACTTGGGACCGAGTATTGCAATTATTGGTCGCGCAACG357810.10566812118205952No Hit
ATCACGTAGACCCACTTGGGACCGAGTATTGCAATTATTGGTCGCGCAAC348340.10287144946356616No Hit
ATCGAGTAACAGTTGGAGGAC345890.1021479177095737No Hit
CGGAATCACGTAGACCCACTTGGGACCGAGT341310.10079535630823269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)