FastQCFastQC Report
Wed 8 Jan 2025
SRR2125770.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2125770.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2119065
Total Bases79.3 Mbp
Sequences flagged as poor quality0
Sequence length20-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCTC164710.777276770651207No Hit
TCGGGAGTTCGAATCTCTCTGAGCGCACCA156850.7401849400561097No Hit
GACCAATACTAATTGCTCGTGAGGCTTGACT120830.5702043118073301No Hit
AATACTAATTGCTCGTGAGGCTTGACT104280.4921038288112918No Hit
TCGGGAGTTCGAATCTCTCTGAGCGCACCG102170.48214660711209895No Hit
ACCAATACTAATTGCTCGTGAGGCTTGACT86450.40796294592190424No Hit
TTGATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACT76930.36303747171511963No Hit
ATACTAATTGCTCGTGAGGCTTGACT76570.3613386092451152No Hit
CGGGAGTTCGAATCTCTCTGAGCGCACCA63790.3010289915599569No Hit
TGACCAATACTAATTGCTCGTGAGGCTTGACT56200.26521130781736285No Hit
GACCAATACTAATTGCTCGTGAGGCTTGACG54520.25728328295734204No Hit
TGCTGGCGACAATAGCAAGAGTGAACCACCTGATCCCTTCCCGAACTCAG50070.23628345520312022No Hit
ATCCATGTGAGAGTAAGTCATCGCCAGCTC49080.231611583410608No Hit
GTCGGGAGTTCGAATCTCTCTGAGCGCACCA48770.23014867406143746No Hit
AATACTAATTGCTCGTGAGGCTTGACG48130.22712847411476286No Hit
CTGATGGTAGTGTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCTCT45880.21651058367723502No Hit
TATCCATGTGAGAGTAAGTCATCGCCAGCTC43830.20683650572304296No Hit
TAGTGATATGTGAAGCTGACCAATACTAATTGCTCGTGAGGCTTGACT41780.19716242776885087No Hit
TTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTAATTGCTC41300.19489727780884494No Hit
CGGGAGTTCGAATCTCTCTGAGCGCACCG39830.1879602560563267No Hit
TGATGGTAGTGTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCTC39370.18578948734465436No Hit
AATTCCACCACGTTCCCGTGG38780.18300524051881373No Hit
AGTGATATGTGAAGCTGACCAATACTAATTGCTCGTGAGGCTTGACT37510.1770120312496313No Hit
ACCAATACTAATTGCTCGTGAGGCTTGACG36800.17366149693378918No Hit
ATACTAATTGCTCGTGAGGCTTGACG35400.16705480955043853No Hit
GCTGACCAATACTAATTGCTCGTGAGGCTTGACT32240.1521425723137327No Hit
GCTGATGGTAGTGTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCTC32190.15190661919289875No Hit
AGTTATCCATGTGAGAGTAAGTCATCGCCAGCTC31290.1476594630178876No Hit
GTCGGGAGTTCGAATCTCTCTGAGCGCACCG31040.14647969741371786No Hit
CAGTAATGCATTAAGCTAACCAGTACTAATTGCCCGTGCGGCTTGAC31010.14633812554121747No Hit
GAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA30950.14605498179621673No Hit
CAATACTAATTGCTCGTGAGGCTTGACT30280.14289320997704175No Hit
CATGTGAGAGTAAGTCATCGCCAGCTC29730.14029772564786827No Hit
TGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA29540.13940110378869927No Hit
CGTTCCCGTGGTCCACCACGTTCCCGTGG29140.13751347882202763No Hit
CACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCAC28760.1357202351036896No Hit
ATGTGAGAGTAAGTCATCGCCAGCTC27840.13137869768034485No Hit
GTCCCTATCGTCTAGAGGCCTAGGACATCGCCCTTTCACGGCGGTAACCG27720.13081241019034337No Hit
TTGTAATCAGTAGGTCCACAGTTCGAATCCGTGTGCCGGCACCG27110.12793378211616915No Hit
AAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA26900.12694277900866657No Hit
ACTAATTGCTCGTGAGGCTTGACT26480.12496077279366136No Hit
GTTATCCATGTGAGAGTAAGTCATCGCCAGCTC26410.12463043842449381No Hit
ACTTGGCTGCGAACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACC26180.12354505406865764No Hit
AACTAAGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA25600.12080799786698378No Hit
TGACCAATACTAATTGCTCGTGAGGCTTGACG25300.11939227914198006No Hit
CCACCACGTTCCCGTGGCCACCACGTTCCCGTGG25010.11802375104114314No Hit
AGGGGTCGGGAGTTCGAATCTCTCTGAGCGCACCA24580.11599455420197116No Hit
TACTAATTGCTCGTGAGGCTTGACT24200.1142013104836331No Hit
TTATCCATGTGAGAGTAAGTCATCGCCAGCTC23960.11306873550363014No Hit
CCAATACTAATTGCTCGTGAGGCTTGACT23870.11264401988612903No Hit
GATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTAA23710.11188896989946039No Hit
GTGATATGTGAAGCTGACCAATACTAATTGCTCGTGAGGCTTGACT23370.1102844886777895No Hit
CGCTGATGGTAGTGTGGAGTTATCCATGTGAGAGTAAGTCATCGCCAGCT22730.1072642887311149No Hit
TTCGAATCTCTCTGAGCGCACCA22240.10495194814694217No Hit
AGTTCGAATCTCTCTGAGCGCACCA22190.1047159950261082No Hit
TTGTAATCAGTAGGTCCACAGTTCGAATCCGTGTGCCGGCACCA22050.10405532628777314No Hit
ATAGTGATATGTGAAGCTGACCAATACTAATTGCTCGTGAGGCTTGACTT22000.10381937316693919No Hit
ATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTAAT21600.10193174820026757No Hit
TGATAGGTTGGATGTGGAAGCATAGTGATATGTGAAGCTGACCAATACTA21350.10075198259609781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)